Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 OPRL1-203ENST00000355631 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 FUBP1-203ENST00000370768 2378 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 INE2-201ENST00000630399 1874 ntBASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 RPP21-221ENST00000428040 594 ntTSL 2 BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 TMEM198B-204ENST00000484016 896 ntBASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 AC093520.2-201ENST00000561830 333 ntBASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 AL513210.1-201ENST00000629608 234 ntBASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 RAB34-224ENST00000636513 888 ntTSL 5 BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 APCDD1L-AS1-203ENST00000427140 2092 ntTSL 2 BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 ELL2P1-201ENST00000413990 1906 ntBASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 C7orf57-204ENST00000435376 1925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 C7orf57-206ENST00000539619 1927 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 KRT8P24-201ENST00000560290 1559 ntBASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 CNTN1-203ENST00000547702 3033 ntTSL 2 BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 MANBA-202ENST00000505239 2577 ntTSL 2 BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
CCDC28BQ9BUN5 TAS1R3-201ENST00000339381 3433 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
CCDC28BQ9BUN5 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC28BQ9BUN5 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC28BQ9BUN5 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC28BQ9BUN5 MGC16275-201ENST00000499670 2501 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC28BQ9BUN5 AL157414.3-201ENST00000624276 1954 ntBASIC14.67□□□□□ -0.06
CCDC28BQ9BUN5 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC28BQ9BUN5 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC14.67□□□□□ -0.06
CCDC28BQ9BUN5 SRC-202ENST00000373558 4304 ntTSL 5 BASIC14.67□□□□□ -0.06
CCDC28BQ9BUN5 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
CCDC28BQ9BUN5 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC28BQ9BUN5 AC090505.1-201ENST00000430515 1834 ntBASIC14.67□□□□□ -0.06
CCDC28BQ9BUN5 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC14.67□□□□□ -0.06
CCDC28BQ9BUN5 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC28BQ9BUN5 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC28BQ9BUN5 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC28BQ9BUN5 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC14.67□□□□□ -0.06
CCDC28BQ9BUN5 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC28BQ9BUN5 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC14.67□□□□□ -0.06
CCDC28BQ9BUN5 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC14.67□□□□□ -0.06
CCDC28BQ9BUN5 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC14.67□□□□□ -0.06
CCDC28BQ9BUN5 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC14.67□□□□□ -0.06
CCDC28BQ9BUN5 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
CCDC28BQ9BUN5 PUS1-205ENST00000535067 838 ntTSL 3 BASIC14.67□□□□□ -0.06
CCDC28BQ9BUN5 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC14.67□□□□□ -0.06
CCDC28BQ9BUN5 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC14.67□□□□□ -0.06
CCDC28BQ9BUN5 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC14.67□□□□□ -0.06
CCDC28BQ9BUN5 MIR4453-201ENST00000584019 89 ntBASIC14.67□□□□□ -0.06
CCDC28BQ9BUN5 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC14.67□□□□□ -0.06
CCDC28BQ9BUN5 MTDHP5-201ENST00000598980 586 ntBASIC14.67□□□□□ -0.06
CCDC28BQ9BUN5 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC14.67□□□□□ -0.06
CCDC28BQ9BUN5 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC14.67□□□□□ -0.06
CCDC28BQ9BUN5 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC14.67□□□□□ -0.06
CCDC28BQ9BUN5 GOLGA6L17P-202ENST00000614358 1398 ntBASIC14.67□□□□□ -0.06
CCDC28BQ9BUN5 AL139385.1-201ENST00000611744 3272 ntBASIC14.67□□□□□ -0.06
CCDC28BQ9BUN5 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC28BQ9BUN5 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC28BQ9BUN5 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC14.67□□□□□ -0.06
CCDC28BQ9BUN5 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms