Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC15.9■□□□□ 0.14
PAAF1Q9BRP4 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC15.9■□□□□ 0.14
PAAF1Q9BRP4 HLA-J-204ENST00000495278 958 ntBASIC15.9■□□□□ 0.14
PAAF1Q9BRP4 ALG3P1-201ENST00000508806 1114 ntBASIC15.9■□□□□ 0.14
PAAF1Q9BRP4 SCARNA21-201ENST00000517026 139 ntBASIC15.9■□□□□ 0.14
PAAF1Q9BRP4 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC15.9■□□□□ 0.14
PAAF1Q9BRP4 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC15.9■□□□□ 0.14
PAAF1Q9BRP4 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC15.9■□□□□ 0.14
PAAF1Q9BRP4 RN7SL574P-201ENST00000581512 297 ntBASIC15.9■□□□□ 0.14
PAAF1Q9BRP4 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC15.9■□□□□ 0.14
PAAF1Q9BRP4 AC008825.2-201ENST00000603374 718 ntBASIC15.9■□□□□ 0.14
PAAF1Q9BRP4 AC106872.11-201ENST00000605838 421 ntBASIC15.9■□□□□ 0.14
PAAF1Q9BRP4 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PAAF1Q9BRP4 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC15.9■□□□□ 0.14
PAAF1Q9BRP4 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
PAAF1Q9BRP4 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PAAF1Q9BRP4 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PAAF1Q9BRP4 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
PAAF1Q9BRP4 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC15.9■□□□□ 0.14
PAAF1Q9BRP4 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PAAF1Q9BRP4 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PAAF1Q9BRP4 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC15.9■□□□□ 0.14
PAAF1Q9BRP4 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PAAF1Q9BRP4 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PAAF1Q9BRP4 AMT-204ENST00000427987 1646 ntTSL 5 BASIC15.9■□□□□ 0.14
PAAF1Q9BRP4 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
PAAF1Q9BRP4 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
PAAF1Q9BRP4 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC15.9■□□□□ 0.14
PAAF1Q9BRP4 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PAAF1Q9BRP4 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PAAF1Q9BRP4 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PAAF1Q9BRP4 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
PAAF1Q9BRP4 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PAAF1Q9BRP4 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC15.89■□□□□ 0.13
PAAF1Q9BRP4 GSN-215ENST00000545652 2428 ntTSL 2 BASIC15.89■□□□□ 0.13
PAAF1Q9BRP4 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
PAAF1Q9BRP4 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PAAF1Q9BRP4 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PAAF1Q9BRP4 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
PAAF1Q9BRP4 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PAAF1Q9BRP4 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
PAAF1Q9BRP4 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC15.89■□□□□ 0.13
PAAF1Q9BRP4 AC022532.1-201ENST00000624563 1728 ntBASIC15.89■□□□□ 0.13
PAAF1Q9BRP4 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
PAAF1Q9BRP4 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PAAF1Q9BRP4 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PAAF1Q9BRP4 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PAAF1Q9BRP4 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC15.89■□□□□ 0.13
PAAF1Q9BRP4 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PAAF1Q9BRP4 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PAAF1Q9BRP4 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC15.89■□□□□ 0.13
PAAF1Q9BRP4 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC15.89■□□□□ 0.13
PAAF1Q9BRP4 AC011742.3-201ENST00000439053 820 ntBASIC15.89■□□□□ 0.13
PAAF1Q9BRP4 PUDPP3-201ENST00000445368 636 ntBASIC15.89■□□□□ 0.13
PAAF1Q9BRP4 UPF3AP2-201ENST00000457924 1132 ntBASIC15.89■□□□□ 0.13
PAAF1Q9BRP4 AC125604.1-201ENST00000496255 707 ntBASIC15.89■□□□□ 0.13
PAAF1Q9BRP4 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC15.89■□□□□ 0.13
PAAF1Q9BRP4 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC15.89■□□□□ 0.13
PAAF1Q9BRP4 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC15.89■□□□□ 0.13
PAAF1Q9BRP4 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
PAAF1Q9BRP4 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC15.89■□□□□ 0.13
PAAF1Q9BRP4 AC008805.1-201ENST00000590892 364 ntBASIC15.89■□□□□ 0.13
PAAF1Q9BRP4 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
PAAF1Q9BRP4 MIR6720-201ENST00000611664 98 ntBASIC15.89■□□□□ 0.13
PAAF1Q9BRP4 AF254983.2-201ENST00000612331 135 ntBASIC15.89■□□□□ 0.13
PAAF1Q9BRP4 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC15.89■□□□□ 0.13
PAAF1Q9BRP4 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PAAF1Q9BRP4 MECR-202ENST00000373791 2416 ntTSL 2 BASIC15.89■□□□□ 0.13
PAAF1Q9BRP4 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
PAAF1Q9BRP4 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
PAAF1Q9BRP4 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PAAF1Q9BRP4 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PAAF1Q9BRP4 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PAAF1Q9BRP4 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC15.89■□□□□ 0.13
PAAF1Q9BRP4 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
PAAF1Q9BRP4 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC15.89■□□□□ 0.13
PAAF1Q9BRP4 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PAAF1Q9BRP4 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
PAAF1Q9BRP4 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PAAF1Q9BRP4 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PAAF1Q9BRP4 AC092384.3-202ENST00000564646 2873 ntBASIC15.89■□□□□ 0.13
PAAF1Q9BRP4 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
PAAF1Q9BRP4 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PAAF1Q9BRP4 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
PAAF1Q9BRP4 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
PAAF1Q9BRP4 FAM90A7P-201ENST00000382628 1395 ntBASIC15.88■□□□□ 0.13
PAAF1Q9BRP4 FAM90A23P-201ENST00000400136 1395 ntBASIC15.88■□□□□ 0.13
PAAF1Q9BRP4 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
PAAF1Q9BRP4 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PAAF1Q9BRP4 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
PAAF1Q9BRP4 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
PAAF1Q9BRP4 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC15.88■□□□□ 0.13
PAAF1Q9BRP4 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PAAF1Q9BRP4 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
PAAF1Q9BRP4 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
PAAF1Q9BRP4 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC15.88■□□□□ 0.13
PAAF1Q9BRP4 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC15.88■□□□□ 0.13
PAAF1Q9BRP4 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
PAAF1Q9BRP4 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PAAF1Q9BRP4 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms