Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
SKA3Q8IX90 DKFZP434A062-201ENST00000573103 5021 ntBASIC13.39□□□□□ -0.27
SKA3Q8IX90 USE1-206ENST00000595101 1776 ntTSL 2 BASIC13.39□□□□□ -0.27
SKA3Q8IX90 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC13.39□□□□□ -0.27
SKA3Q8IX90 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC13.39□□□□□ -0.27
SKA3Q8IX90 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
SKA3Q8IX90 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SKA3Q8IX90 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC13.39□□□□□ -0.27
SKA3Q8IX90 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
SKA3Q8IX90 PCDHA3-202ENST00000532566 4594 ntBASIC13.39□□□□□ -0.27
SKA3Q8IX90 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
SKA3Q8IX90 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SKA3Q8IX90 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SKA3Q8IX90 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC13.39□□□□□ -0.27
SKA3Q8IX90 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC13.39□□□□□ -0.27
SKA3Q8IX90 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SKA3Q8IX90 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SKA3Q8IX90 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SKA3Q8IX90 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SKA3Q8IX90 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
SKA3Q8IX90 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
SKA3Q8IX90 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SKA3Q8IX90 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
SKA3Q8IX90 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SKA3Q8IX90 ACE3P-201ENST00000423435 1973 ntBASIC13.38□□□□□ -0.27
SKA3Q8IX90 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SKA3Q8IX90 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SKA3Q8IX90 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SKA3Q8IX90 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SKA3Q8IX90 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
SKA3Q8IX90 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC13.38□□□□□ -0.27
SKA3Q8IX90 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
SKA3Q8IX90 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SKA3Q8IX90 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
SKA3Q8IX90 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
SKA3Q8IX90 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
SKA3Q8IX90 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC13.38□□□□□ -0.27
SKA3Q8IX90 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SKA3Q8IX90 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC13.38□□□□□ -0.27
SKA3Q8IX90 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
SKA3Q8IX90 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
SKA3Q8IX90 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SKA3Q8IX90 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC13.38□□□□□ -0.27
SKA3Q8IX90 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
SKA3Q8IX90 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
SKA3Q8IX90 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC13.38□□□□□ -0.27
SKA3Q8IX90 AL035633.1-201ENST00000406139 838 ntBASIC13.38□□□□□ -0.27
SKA3Q8IX90 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC13.38□□□□□ -0.27
SKA3Q8IX90 HLA-K-203ENST00000430151 1046 ntBASIC13.38□□□□□ -0.27
SKA3Q8IX90 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
SKA3Q8IX90 PTPA-220ENST00000436883 532 ntTSL 4 BASIC13.38□□□□□ -0.27
SKA3Q8IX90 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
SKA3Q8IX90 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SKA3Q8IX90 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SKA3Q8IX90 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC13.38□□□□□ -0.27
SKA3Q8IX90 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC13.38□□□□□ -0.27
SKA3Q8IX90 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC13.38□□□□□ -0.27
SKA3Q8IX90 AP001063.1-201ENST00000568332 529 ntBASIC13.38□□□□□ -0.27
SKA3Q8IX90 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC13.38□□□□□ -0.27
SKA3Q8IX90 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC13.38□□□□□ -0.27
SKA3Q8IX90 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC13.38□□□□□ -0.27
SKA3Q8IX90 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
SKA3Q8IX90 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC13.38□□□□□ -0.27
SKA3Q8IX90 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SKA3Q8IX90 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SKA3Q8IX90 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SKA3Q8IX90 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
SKA3Q8IX90 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SKA3Q8IX90 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
SKA3Q8IX90 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC13.38□□□□□ -0.27
SKA3Q8IX90 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SKA3Q8IX90 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC13.38□□□□□ -0.27
SKA3Q8IX90 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC13.38□□□□□ -0.27
SKA3Q8IX90 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SKA3Q8IX90 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
SKA3Q8IX90 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SKA3Q8IX90 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SKA3Q8IX90 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC13.38□□□□□ -0.27
SKA3Q8IX90 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SKA3Q8IX90 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SKA3Q8IX90 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SKA3Q8IX90 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SKA3Q8IX90 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
SKA3Q8IX90 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
SKA3Q8IX90 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SKA3Q8IX90 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
SKA3Q8IX90 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC13.37□□□□□ -0.27
SKA3Q8IX90 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SKA3Q8IX90 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SKA3Q8IX90 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
SKA3Q8IX90 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC13.37□□□□□ -0.27
SKA3Q8IX90 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
SKA3Q8IX90 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC13.37□□□□□ -0.27
SKA3Q8IX90 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC13.37□□□□□ -0.27
SKA3Q8IX90 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC13.37□□□□□ -0.27
SKA3Q8IX90 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC13.37□□□□□ -0.27
SKA3Q8IX90 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC13.37□□□□□ -0.27
SKA3Q8IX90 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC13.37□□□□□ -0.27
SKA3Q8IX90 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC13.37□□□□□ -0.27
SKA3Q8IX90 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC13.37□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 118.3 ms