Protein–RNA interactions for Protein: P49759

CLK1, Dual specificity protein kinase CLK1, humanhuman

Known RBP Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1P49759 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC14.26□□□□□ -0.13
CLK1P49759 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLK1P49759 CFAP74-209ENST00000493964 5247 ntAPPRIS P5 TSL 5 BASIC14.26□□□□□ -0.13
CLK1P49759 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLK1P49759 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CLK1P49759 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLK1P49759 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC14.26□□□□□ -0.13
CLK1P49759 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC14.26□□□□□ -0.13
CLK1P49759 STRN-202ENST00000379213 2254 ntTSL 5 BASIC14.26□□□□□ -0.13
CLK1P49759 SATB2-211ENST00000614512 4972 ntTSL 5 BASIC14.26□□□□□ -0.13
CLK1P49759 GAB2-202ENST00000361507 6092 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLK1P49759 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CLK1P49759 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC14.26□□□□□ -0.13
CLK1P49759 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
CLK1P49759 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLK1P49759 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CLK1P49759 DNM1-212ENST00000627543 4734 ntAPPRIS ALT1 TSL 5 BASIC14.26□□□□□ -0.13
CLK1P49759 PRELP-201ENST00000343110 5747 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLK1P49759 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLK1P49759 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
CLK1P49759 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC14.25□□□□□ -0.13
CLK1P49759 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC14.25□□□□□ -0.13
CLK1P49759 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLK1P49759 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLK1P49759 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC14.25□□□□□ -0.13
CLK1P49759 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC14.25□□□□□ -0.13
CLK1P49759 NFATC1-205ENST00000427363 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLK1P49759 ZNF541-202ENST00000314121 4631 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
CLK1P49759 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLK1P49759 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC14.25□□□□□ -0.13
CLK1P49759 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLK1P49759 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLK1P49759 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLK1P49759 RPS6KC1-206ENST00000543354 4082 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CLK1P49759 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLK1P49759 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC14.25□□□□□ -0.13
CLK1P49759 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLK1P49759 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CLK1P49759 C10orf71-201ENST00000374144 5230 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLK1P49759 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
CLK1P49759 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC14.25□□□□□ -0.13
CLK1P49759 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLK1P49759 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC14.25□□□□□ -0.13
CLK1P49759 HNRNPA3P1-201ENST00000401429 1139 ntBASIC14.25□□□□□ -0.13
CLK1P49759 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC14.25□□□□□ -0.13
CLK1P49759 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC14.25□□□□□ -0.13
CLK1P49759 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
CLK1P49759 TARDBPP1-201ENST00000442013 1203 ntBASIC14.25□□□□□ -0.13
CLK1P49759 HNRNPA3P5-201ENST00000455201 833 ntBASIC14.25□□□□□ -0.13
CLK1P49759 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CLK1P49759 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC14.25□□□□□ -0.13
CLK1P49759 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC14.25□□□□□ -0.13
CLK1P49759 IGHV3-42-201ENST00000520410 361 ntBASIC14.25□□□□□ -0.13
CLK1P49759 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CLK1P49759 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC14.25□□□□□ -0.13
CLK1P49759 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC14.25□□□□□ -0.13
CLK1P49759 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC14.25□□□□□ -0.13
CLK1P49759 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC14.25□□□□□ -0.13
CLK1P49759 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLK1P49759 AC074044.1-201ENST00000609673 707 ntBASIC14.25□□□□□ -0.13
CLK1P49759 AC093512.1-201ENST00000617969 520 ntBASIC14.25□□□□□ -0.13
CLK1P49759 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CLK1P49759 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLK1P49759 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLK1P49759 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLK1P49759 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLK1P49759 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLK1P49759 AC018892.3-201ENST00000623986 2499 ntBASIC14.25□□□□□ -0.13
CLK1P49759 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLK1P49759 GRN-214ENST00000589265 1632 ntTSL 5 BASIC14.25□□□□□ -0.13
CLK1P49759 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLK1P49759 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLK1P49759 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLK1P49759 GRWD1-201ENST00000253237 5571 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLK1P49759 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CLK1P49759 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
CLK1P49759 SPECC1L-ADORA2A-201ENST00000358654 6204 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
CLK1P49759 MED22-209ENST00000610888 3867 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLK1P49759 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CLK1P49759 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
CLK1P49759 CCDC88A-204ENST00000413716 9586 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CLK1P49759 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC14.25□□□□□ -0.13
CLK1P49759 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLK1P49759 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
CLK1P49759 NRXN1-207ENST00000404971 7578 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CLK1P49759 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
CLK1P49759 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CLK1P49759 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC14.24□□□□□ -0.13
CLK1P49759 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC14.24□□□□□ -0.13
CLK1P49759 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC14.24□□□□□ -0.13
CLK1P49759 AL928921.2-201ENST00000641325 2442 ntBASIC14.24□□□□□ -0.13
CLK1P49759 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLK1P49759 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC14.24□□□□□ -0.13
CLK1P49759 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLK1P49759 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC14.24□□□□□ -0.13
CLK1P49759 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLK1P49759 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLK1P49759 HECTD1-219ENST00000611816 8980 ntTSL 5 BASIC14.24□□□□□ -0.13
CLK1P49759 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CLK1P49759 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 86.5 ms