Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC12.41□□□□□ -0.42
CDX1P47902 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
CDX1P47902 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
CDX1P47902 COQ9-214ENST00000567933 882 ntTSL 3 BASIC12.41□□□□□ -0.42
CDX1P47902 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC12.41□□□□□ -0.42
CDX1P47902 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
CDX1P47902 TEX48-202ENST00000612244 662 ntTSL 3 BASIC12.41□□□□□ -0.42
CDX1P47902 5S_rRNA.22-201ENST00000614916 106 ntBASIC12.41□□□□□ -0.42
CDX1P47902 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC12.41□□□□□ -0.42
CDX1P47902 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
CDX1P47902 RUBCNL-201ENST00000378781 3322 ntAPPRIS ALT2 TSL 2 BASIC12.41□□□□□ -0.42
CDX1P47902 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
CDX1P47902 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
CDX1P47902 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC12.41□□□□□ -0.42
CDX1P47902 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC12.41□□□□□ -0.42
CDX1P47902 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC12.41□□□□□ -0.42
CDX1P47902 ALAS1-204ENST00000469224 2125 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
CDX1P47902 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
CDX1P47902 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
CDX1P47902 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
CDX1P47902 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC12.41□□□□□ -0.42
CDX1P47902 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC12.41□□□□□ -0.42
CDX1P47902 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
CDX1P47902 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
CDX1P47902 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC12.41□□□□□ -0.42
CDX1P47902 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
CDX1P47902 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
CDX1P47902 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
CDX1P47902 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
CDX1P47902 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
CDX1P47902 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
CDX1P47902 ROPN1-206ENST00000479867 2056 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
CDX1P47902 ROPN1B-202ENST00000504401 2050 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
CDX1P47902 TNPO2-218ENST00000592287 2914 ntAPPRIS P4 TSL 1 (best) BASIC12.41□□□□□ -0.42
CDX1P47902 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
CDX1P47902 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC12.41□□□□□ -0.42
CDX1P47902 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
CDX1P47902 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
CDX1P47902 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
CDX1P47902 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
CDX1P47902 ZNRF3-202ENST00000406323 2878 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
CDX1P47902 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
CDX1P47902 TRIO-202ENST00000344204 11100 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
CDX1P47902 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
CDX1P47902 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
CDX1P47902 IL13RA1-202ENST00000371666 4036 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
CDX1P47902 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC12.4□□□□□ -0.42
CDX1P47902 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC12.4□□□□□ -0.42
CDX1P47902 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC12.4□□□□□ -0.42
CDX1P47902 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
CDX1P47902 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
CDX1P47902 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
CDX1P47902 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
CDX1P47902 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC12.4□□□□□ -0.42
CDX1P47902 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC12.4□□□□□ -0.42
CDX1P47902 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
CDX1P47902 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
CDX1P47902 AC044860.1-202ENST00000559481 777 ntBASIC12.4□□□□□ -0.42
CDX1P47902 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
CDX1P47902 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC12.4□□□□□ -0.42
CDX1P47902 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC12.4□□□□□ -0.42
CDX1P47902 RNA5-8SN1-201ENST00000610460 153 ntBASIC12.4□□□□□ -0.42
CDX1P47902 RNA5-8SN5-202ENST00000612463 153 ntBASIC12.4□□□□□ -0.42
CDX1P47902 RNA5-8SN4-201ENST00000613359 153 ntBASIC12.4□□□□□ -0.42
CDX1P47902 RNA5-8SN5-201ENST00000619471 153 ntBASIC12.4□□□□□ -0.42
CDX1P47902 AC004840.1-201ENST00000636359 365 ntBASIC12.4□□□□□ -0.42
CDX1P47902 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
CDX1P47902 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
CDX1P47902 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
CDX1P47902 AL031728.1-201ENST00000449034 2479 ntTSL 3 BASIC12.4□□□□□ -0.42
CDX1P47902 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
CDX1P47902 SYDE1-201ENST00000342784 3264 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
CDX1P47902 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC12.4□□□□□ -0.42
CDX1P47902 VPS52-212ENST00000445902 2960 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
CDX1P47902 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC12.4□□□□□ -0.42
CDX1P47902 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
CDX1P47902 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
CDX1P47902 TDG-209ENST00000544861 1387 ntTSL 2 BASIC12.4□□□□□ -0.42
CDX1P47902 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC12.4□□□□□ -0.42
CDX1P47902 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC12.4□□□□□ -0.42
CDX1P47902 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
CDX1P47902 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC12.4□□□□□ -0.42
CDX1P47902 AL591122.2-201ENST00000624125 1853 ntBASIC12.4□□□□□ -0.42
CDX1P47902 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC12.4□□□□□ -0.43
CDX1P47902 ZNF519-206ENST00000589498 2117 ntTSL 2 BASIC12.4□□□□□ -0.43
CDX1P47902 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
CDX1P47902 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.43
CDX1P47902 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.43
CDX1P47902 KLHL34-201ENST00000379499 3641 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
CDX1P47902 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
CDX1P47902 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
CDX1P47902 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
CDX1P47902 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC12.39□□□□□ -0.43
CDX1P47902 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC12.39□□□□□ -0.43
CDX1P47902 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC12.39□□□□□ -0.43
CDX1P47902 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
CDX1P47902 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
CDX1P47902 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
CDX1P47902 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
CDX1P47902 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms