Protein–RNA interactions for Protein: P41273

TNFSF9, Tumor necrosis factor ligand superfamily member 9, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFSF9P41273 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TNFSF9P41273 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TNFSF9P41273 AC007292.2-201ENST00000593524 1812 ntBASIC16.21■□□□□ 0.19
TNFSF9P41273 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC16.21■□□□□ 0.19
TNFSF9P41273 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC16.21■□□□□ 0.18
TNFSF9P41273 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
TNFSF9P41273 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TNFSF9P41273 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC16.2■□□□□ 0.18
TNFSF9P41273 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC16.2■□□□□ 0.18
TNFSF9P41273 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC16.2■□□□□ 0.18
TNFSF9P41273 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC16.2■□□□□ 0.18
TNFSF9P41273 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
TNFSF9P41273 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
TNFSF9P41273 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
TNFSF9P41273 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC16.2■□□□□ 0.18
TNFSF9P41273 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TNFSF9P41273 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC16.2■□□□□ 0.18
TNFSF9P41273 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC16.2■□□□□ 0.18
TNFSF9P41273 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TNFSF9P41273 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TNFSF9P41273 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
TNFSF9P41273 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC16.2■□□□□ 0.18
TNFSF9P41273 ACTBP11-201ENST00000436287 1126 ntBASIC16.2■□□□□ 0.18
TNFSF9P41273 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC16.2■□□□□ 0.18
TNFSF9P41273 Z93015.1-201ENST00000451718 390 ntBASIC16.2■□□□□ 0.18
TNFSF9P41273 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TNFSF9P41273 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC16.2■□□□□ 0.18
TNFSF9P41273 AC131206.1-201ENST00000538078 1211 ntBASIC16.2■□□□□ 0.18
TNFSF9P41273 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC16.2■□□□□ 0.18
TNFSF9P41273 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
TNFSF9P41273 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC16.2■□□□□ 0.18
TNFSF9P41273 KLK3-211ENST00000597483 810 ntTSL 2 BASIC16.2■□□□□ 0.18
TNFSF9P41273 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC16.2■□□□□ 0.18
TNFSF9P41273 AP001002.3-201ENST00000623482 206 ntBASIC16.2■□□□□ 0.18
TNFSF9P41273 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TNFSF9P41273 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC16.2■□□□□ 0.18
TNFSF9P41273 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TNFSF9P41273 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TNFSF9P41273 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TNFSF9P41273 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC16.2■□□□□ 0.18
TNFSF9P41273 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC16.2■□□□□ 0.18
TNFSF9P41273 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC16.2■□□□□ 0.18
TNFSF9P41273 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
TNFSF9P41273 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC16.2■□□□□ 0.18
TNFSF9P41273 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TNFSF9P41273 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC16.2■□□□□ 0.18
TNFSF9P41273 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
TNFSF9P41273 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC16.2■□□□□ 0.18
TNFSF9P41273 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC16.2■□□□□ 0.18
TNFSF9P41273 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TNFSF9P41273 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TNFSF9P41273 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TNFSF9P41273 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TNFSF9P41273 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
TNFSF9P41273 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TNFSF9P41273 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
TNFSF9P41273 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC16.19■□□□□ 0.18
TNFSF9P41273 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
TNFSF9P41273 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TNFSF9P41273 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TNFSF9P41273 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
TNFSF9P41273 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
TNFSF9P41273 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TNFSF9P41273 MTHFR-210ENST00000641407 2387 ntBASIC16.19■□□□□ 0.18
TNFSF9P41273 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC16.19■□□□□ 0.18
TNFSF9P41273 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC16.19■□□□□ 0.18
TNFSF9P41273 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
TNFSF9P41273 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TNFSF9P41273 BRWD1P1-201ENST00000401091 371 ntBASIC16.19■□□□□ 0.18
TNFSF9P41273 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC16.19■□□□□ 0.18
TNFSF9P41273 MTX1P1-201ENST00000440904 838 ntBASIC16.19■□□□□ 0.18
TNFSF9P41273 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC16.19■□□□□ 0.18
TNFSF9P41273 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TNFSF9P41273 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC16.19■□□□□ 0.18
TNFSF9P41273 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC16.19■□□□□ 0.18
TNFSF9P41273 AC108725.1-201ENST00000495472 409 ntBASIC16.19■□□□□ 0.18
TNFSF9P41273 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC16.19■□□□□ 0.18
TNFSF9P41273 NCK2-206ENST00000522586 490 ntTSL 5 BASIC16.19■□□□□ 0.18
TNFSF9P41273 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC16.19■□□□□ 0.18
TNFSF9P41273 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC16.19■□□□□ 0.18
TNFSF9P41273 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC16.19■□□□□ 0.18
TNFSF9P41273 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TNFSF9P41273 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TNFSF9P41273 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
TNFSF9P41273 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC16.19■□□□□ 0.18
TNFSF9P41273 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TNFSF9P41273 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC16.19■□□□□ 0.18
TNFSF9P41273 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC16.19■□□□□ 0.18
TNFSF9P41273 AC015818.8-201ENST00000587907 1519 ntBASIC16.19■□□□□ 0.18
TNFSF9P41273 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TNFSF9P41273 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TNFSF9P41273 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TNFSF9P41273 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
TNFSF9P41273 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TNFSF9P41273 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC16.19■□□□□ 0.18
TNFSF9P41273 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
TNFSF9P41273 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC16.18■□□□□ 0.18
TNFSF9P41273 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
TNFSF9P41273 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC16.18■□□□□ 0.18
TNFSF9P41273 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 68.7 ms