Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TPM1P09493 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC16.67■□□□□ 0.26
TPM1P09493 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC16.67■□□□□ 0.26
TPM1P09493 TPT1P11-201ENST00000458482 498 ntBASIC16.67■□□□□ 0.26
TPM1P09493 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC16.67■□□□□ 0.26
TPM1P09493 PUS1-205ENST00000535067 838 ntTSL 3 BASIC16.67■□□□□ 0.26
TPM1P09493 CCND1-203ENST00000536559 553 ntTSL 3 BASIC16.67■□□□□ 0.26
TPM1P09493 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC16.67■□□□□ 0.26
TPM1P09493 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC16.67■□□□□ 0.26
TPM1P09493 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC16.67■□□□□ 0.26
TPM1P09493 GPR39-203ENST00000622084 900 ntTSL 5 BASIC16.67■□□□□ 0.26
TPM1P09493 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC16.67■□□□□ 0.26
TPM1P09493 LINC00628-201ENST00000628516 1289 ntBASIC16.67■□□□□ 0.26
TPM1P09493 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TPM1P09493 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TPM1P09493 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
TPM1P09493 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC16.67■□□□□ 0.26
TPM1P09493 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC16.67■□□□□ 0.26
TPM1P09493 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
TPM1P09493 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TPM1P09493 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC16.67■□□□□ 0.26
TPM1P09493 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TPM1P09493 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TPM1P09493 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TPM1P09493 AC152010.1-201ENST00000415779 2006 ntBASIC16.67■□□□□ 0.26
TPM1P09493 CACNA1C-211ENST00000399617 7482 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
TPM1P09493 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TPM1P09493 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TPM1P09493 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TPM1P09493 PIK3R3-203ENST00000420542 5174 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TPM1P09493 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC16.66■□□□□ 0.26
TPM1P09493 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TPM1P09493 RAB18-208ENST00000611151 4931 ntTSL 5 BASIC16.66■□□□□ 0.26
TPM1P09493 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TPM1P09493 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
TPM1P09493 NUDT3-201ENST00000607016 9905 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TPM1P09493 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
TPM1P09493 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC16.66■□□□□ 0.26
TPM1P09493 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TPM1P09493 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
TPM1P09493 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TPM1P09493 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TPM1P09493 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
TPM1P09493 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
TPM1P09493 IMP4-203ENST00000409935 958 ntTSL 5 BASIC16.66■□□□□ 0.26
TPM1P09493 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC16.66■□□□□ 0.26
TPM1P09493 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC16.66■□□□□ 0.26
TPM1P09493 FAM58DP-201ENST00000428076 619 ntBASIC16.66■□□□□ 0.26
TPM1P09493 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
TPM1P09493 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC16.66■□□□□ 0.26
TPM1P09493 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
TPM1P09493 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC16.66■□□□□ 0.26
TPM1P09493 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC16.66■□□□□ 0.26
TPM1P09493 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC16.66■□□□□ 0.26
TPM1P09493 SAMD11P1-201ENST00000571429 661 ntBASIC16.66■□□□□ 0.26
TPM1P09493 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
TPM1P09493 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC16.66■□□□□ 0.26
TPM1P09493 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
TPM1P09493 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC16.66■□□□□ 0.26
TPM1P09493 KIAA0513-202ENST00000538274 7381 ntTSL 2 BASIC16.66■□□□□ 0.26
TPM1P09493 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TPM1P09493 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC16.66■□□□□ 0.26
TPM1P09493 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC16.66■□□□□ 0.26
TPM1P09493 MAD2L1-201ENST00000296509 5468 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TPM1P09493 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TPM1P09493 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
TPM1P09493 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
TPM1P09493 C11orf87-201ENST00000327419 5884 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TPM1P09493 NHSL1-202ENST00000343505 6535 ntAPPRIS P3 TSL 5 BASIC16.66■□□□□ 0.26
TPM1P09493 AL731571.1-201ENST00000617058 5428 ntBASIC16.66■□□□□ 0.26
TPM1P09493 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC16.66■□□□□ 0.26
TPM1P09493 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
TPM1P09493 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC16.66■□□□□ 0.26
TPM1P09493 POU2F2-202ENST00000389341 6901 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
TPM1P09493 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC16.65■□□□□ 0.26
TPM1P09493 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
TPM1P09493 MYO16-203ENST00000357550 6779 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
TPM1P09493 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TPM1P09493 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
TPM1P09493 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC16.65■□□□□ 0.26
TPM1P09493 EPHA5-204ENST00000511294 5176 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
TPM1P09493 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TPM1P09493 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
TPM1P09493 ANKRD11-201ENST00000301030 9301 ntAPPRIS P2 TSL 5 BASIC16.65■□□□□ 0.26
TPM1P09493 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TPM1P09493 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TPM1P09493 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC16.65■□□□□ 0.26
TPM1P09493 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC16.65■□□□□ 0.26
TPM1P09493 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC16.65■□□□□ 0.26
TPM1P09493 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC16.65■□□□□ 0.26
TPM1P09493 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC16.65■□□□□ 0.26
TPM1P09493 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TPM1P09493 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC16.65■□□□□ 0.26
TPM1P09493 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC16.65■□□□□ 0.26
TPM1P09493 MIR6080-201ENST00000617359 66 ntBASIC16.65■□□□□ 0.26
TPM1P09493 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TPM1P09493 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC16.65■□□□□ 0.26
TPM1P09493 AL033527.5-202ENST00000641632 1098 ntBASIC16.65■□□□□ 0.26
TPM1P09493 IGF2BP1-201ENST00000290341 8274 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TPM1P09493 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 56.9 ms