Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 UGT1A2P-201ENST00000454886 866 ntBASIC14.74□□□□□ -0.05
SIX3O95343 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
SIX3O95343 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC14.74□□□□□ -0.05
SIX3O95343 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC14.74□□□□□ -0.05
SIX3O95343 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC14.74□□□□□ -0.05
SIX3O95343 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC14.74□□□□□ -0.05
SIX3O95343 AC120045.2-201ENST00000567334 178 ntBASIC14.74□□□□□ -0.05
SIX3O95343 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
SIX3O95343 BX539320.1-201ENST00000623759 877 ntBASIC14.74□□□□□ -0.05
SIX3O95343 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC14.74□□□□□ -0.05
SIX3O95343 ORC5-208ENST00000626700 344 ntTSL 3 BASIC14.74□□□□□ -0.05
SIX3O95343 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
SIX3O95343 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC14.74□□□□□ -0.05
SIX3O95343 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
SIX3O95343 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
SIX3O95343 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
SIX3O95343 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
SIX3O95343 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SIX3O95343 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SIX3O95343 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC14.74□□□□□ -0.05
SIX3O95343 AC041040.2-201ENST00000622926 2899 ntBASIC14.74□□□□□ -0.05
SIX3O95343 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
SIX3O95343 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
SIX3O95343 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
SIX3O95343 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
SIX3O95343 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC14.74□□□□□ -0.05
SIX3O95343 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC14.74□□□□□ -0.05
SIX3O95343 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC14.74□□□□□ -0.05
SIX3O95343 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC14.73□□□□□ -0.05
SIX3O95343 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SIX3O95343 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SIX3O95343 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
SIX3O95343 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC14.73□□□□□ -0.05
SIX3O95343 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SIX3O95343 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SIX3O95343 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
SIX3O95343 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SIX3O95343 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
SIX3O95343 AC006504.5-208ENST00000588784 2401 ntBASIC14.73□□□□□ -0.05
SIX3O95343 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SIX3O95343 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC14.73□□□□□ -0.05
SIX3O95343 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SIX3O95343 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SIX3O95343 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
SIX3O95343 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC14.73□□□□□ -0.05
SIX3O95343 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC14.73□□□□□ -0.05
SIX3O95343 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
SIX3O95343 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SIX3O95343 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SIX3O95343 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SIX3O95343 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
SIX3O95343 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
SIX3O95343 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SIX3O95343 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SIX3O95343 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SIX3O95343 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SIX3O95343 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC14.73□□□□□ -0.05
SIX3O95343 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC14.73□□□□□ -0.05
SIX3O95343 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
SIX3O95343 RPL13AP25-201ENST00000484130 612 ntBASIC14.73□□□□□ -0.05
SIX3O95343 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SIX3O95343 FADS2-205ENST00000517839 469 ntTSL 3 BASIC14.73□□□□□ -0.05
SIX3O95343 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC14.73□□□□□ -0.05
SIX3O95343 RRP7BP-205ENST00000566851 833 ntBASIC14.73□□□□□ -0.05
SIX3O95343 NAA60-208ENST00000570819 833 ntTSL 2 BASIC14.73□□□□□ -0.05
SIX3O95343 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC14.73□□□□□ -0.05
SIX3O95343 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC14.73□□□□□ -0.05
SIX3O95343 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC14.73□□□□□ -0.05
SIX3O95343 PRSS30P-206ENST00000641773 873 ntBASIC14.73□□□□□ -0.05
SIX3O95343 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SIX3O95343 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SIX3O95343 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC14.73□□□□□ -0.05
SIX3O95343 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC14.73□□□□□ -0.05
SIX3O95343 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
SIX3O95343 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SIX3O95343 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SIX3O95343 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC14.73□□□□□ -0.05
SIX3O95343 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
SIX3O95343 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SIX3O95343 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
SIX3O95343 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SIX3O95343 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC14.73□□□□□ -0.05
SIX3O95343 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SIX3O95343 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SIX3O95343 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
SIX3O95343 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC14.72□□□□□ -0.05
SIX3O95343 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SIX3O95343 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC14.72□□□□□ -0.05
SIX3O95343 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SIX3O95343 CICP4-201ENST00000447359 2812 ntBASIC14.72□□□□□ -0.05
SIX3O95343 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
SIX3O95343 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
SIX3O95343 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SIX3O95343 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SIX3O95343 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC14.72□□□□□ -0.05
SIX3O95343 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
SIX3O95343 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SIX3O95343 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC14.72□□□□□ -0.05
SIX3O95343 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC14.72□□□□□ -0.05
SIX3O95343 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms