Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
MSH4O15457 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
MSH4O15457 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
MSH4O15457 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
MSH4O15457 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
MSH4O15457 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC16.8■□□□□ 0.28
MSH4O15457 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC16.8■□□□□ 0.28
MSH4O15457 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
MSH4O15457 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.28
MSH4O15457 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC16.8■□□□□ 0.28
MSH4O15457 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
MSH4O15457 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC16.8■□□□□ 0.28
MSH4O15457 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
MSH4O15457 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
MSH4O15457 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
MSH4O15457 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
MSH4O15457 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
MSH4O15457 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
MSH4O15457 BTBD6P1-201ENST00000412176 1267 ntBASIC16.8■□□□□ 0.28
MSH4O15457 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
MSH4O15457 HSPB1P2-201ENST00000448722 546 ntBASIC16.8■□□□□ 0.28
MSH4O15457 AC092658.1-201ENST00000505836 891 ntBASIC16.8■□□□□ 0.28
MSH4O15457 ALG3P1-201ENST00000508806 1114 ntBASIC16.8■□□□□ 0.28
MSH4O15457 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC16.8■□□□□ 0.28
MSH4O15457 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC16.8■□□□□ 0.28
MSH4O15457 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC16.8■□□□□ 0.28
MSH4O15457 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC16.8■□□□□ 0.28
MSH4O15457 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC16.8■□□□□ 0.28
MSH4O15457 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
MSH4O15457 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
MSH4O15457 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
MSH4O15457 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
MSH4O15457 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC16.8■□□□□ 0.28
MSH4O15457 CICP24-201ENST00000605464 2705 ntBASIC16.8■□□□□ 0.28
MSH4O15457 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC16.8■□□□□ 0.28
MSH4O15457 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
MSH4O15457 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
MSH4O15457 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
MSH4O15457 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
MSH4O15457 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
MSH4O15457 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
MSH4O15457 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
MSH4O15457 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC16.79■□□□□ 0.28
MSH4O15457 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
MSH4O15457 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
MSH4O15457 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC16.79■□□□□ 0.28
MSH4O15457 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC16.79■□□□□ 0.28
MSH4O15457 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
MSH4O15457 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
MSH4O15457 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC16.79■□□□□ 0.28
MSH4O15457 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
MSH4O15457 BRWD1P1-201ENST00000401091 371 ntBASIC16.79■□□□□ 0.28
MSH4O15457 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC16.79■□□□□ 0.28
MSH4O15457 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
MSH4O15457 AL591846.1-201ENST00000451736 433 ntBASIC16.79■□□□□ 0.28
MSH4O15457 AC108725.1-201ENST00000495472 409 ntBASIC16.79■□□□□ 0.28
MSH4O15457 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC16.79■□□□□ 0.28
MSH4O15457 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC16.79■□□□□ 0.28
MSH4O15457 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC16.79■□□□□ 0.28
MSH4O15457 USB1-203ENST00000539737 1212 ntTSL 2 BASIC16.79■□□□□ 0.28
MSH4O15457 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC16.79■□□□□ 0.28
MSH4O15457 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC16.79■□□□□ 0.28
MSH4O15457 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
MSH4O15457 DERL2-202ENST00000570848 657 ntTSL 5 BASIC16.79■□□□□ 0.28
MSH4O15457 MIR4783-201ENST00000580343 82 ntBASIC16.79■□□□□ 0.28
MSH4O15457 MIR4538-201ENST00000581377 78 ntBASIC16.79■□□□□ 0.28
MSH4O15457 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
MSH4O15457 AL096828.3-201ENST00000615354 462 ntBASIC16.79■□□□□ 0.28
MSH4O15457 AL136301.1-201ENST00000615830 422 ntBASIC16.79■□□□□ 0.28
MSH4O15457 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
MSH4O15457 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC16.79■□□□□ 0.28
MSH4O15457 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
MSH4O15457 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
MSH4O15457 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
MSH4O15457 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
MSH4O15457 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC16.79■□□□□ 0.28
MSH4O15457 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
MSH4O15457 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC16.79■□□□□ 0.28
MSH4O15457 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
MSH4O15457 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
MSH4O15457 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MSH4O15457 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
MSH4O15457 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MSH4O15457 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MSH4O15457 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
MSH4O15457 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC16.78■□□□□ 0.28
MSH4O15457 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MSH4O15457 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MSH4O15457 MTHFR-210ENST00000641407 2387 ntBASIC16.78■□□□□ 0.28
MSH4O15457 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MSH4O15457 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MSH4O15457 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MSH4O15457 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC16.78■□□□□ 0.28
MSH4O15457 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
MSH4O15457 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
MSH4O15457 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
MSH4O15457 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
MSH4O15457 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MSH4O15457 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
MSH4O15457 AC010141.1-201ENST00000411585 623 ntBASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms