Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC8.3□□□□□ -1.08
CHKB-CPT1BH3BT56 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC8.3□□□□□ -1.08
CHKB-CPT1BH3BT56 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
CHKB-CPT1BH3BT56 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC8.3□□□□□ -1.08
CHKB-CPT1BH3BT56 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC8.3□□□□□ -1.08
CHKB-CPT1BH3BT56 GRAMD4P8-201ENST00000605465 1115 ntBASIC8.3□□□□□ -1.08
CHKB-CPT1BH3BT56 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC8.3□□□□□ -1.08
CHKB-CPT1BH3BT56 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
CHKB-CPT1BH3BT56 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC8.3□□□□□ -1.08
CHKB-CPT1BH3BT56 CACNA2D4-202ENST00000382722 5475 ntAPPRIS P2 TSL 1 (best) BASIC8.3□□□□□ -1.08
CHKB-CPT1BH3BT56 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
CHKB-CPT1BH3BT56 MTHFR-210ENST00000641407 2387 ntBASIC8.3□□□□□ -1.08
CHKB-CPT1BH3BT56 PLEKHB2-205ENST00000409279 2488 ntAPPRIS ALT1 TSL 2 BASIC8.3□□□□□ -1.08
CHKB-CPT1BH3BT56 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
CHKB-CPT1BH3BT56 KRT8P44-201ENST00000441609 1350 ntBASIC8.3□□□□□ -1.08
CHKB-CPT1BH3BT56 SLC39A13-204ENST00000524928 3553 ntTSL 2 BASIC8.3□□□□□ -1.08
CHKB-CPT1BH3BT56 NLRP2-214ENST00000543010 3576 ntAPPRIS P3 TSL 1 (best) BASIC8.3□□□□□ -1.08
CHKB-CPT1BH3BT56 AC048382.5-201ENST00000618330 3667 ntTSL 5 BASIC8.3□□□□□ -1.08
CHKB-CPT1BH3BT56 PER1-202ENST00000354903 3115 ntTSL 2 BASIC8.3□□□□□ -1.08
CHKB-CPT1BH3BT56 ELN-222ENST00000458204 3147 ntAPPRIS ALT2 TSL 1 (best) BASIC8.3□□□□□ -1.08
CHKB-CPT1BH3BT56 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
CHKB-CPT1BH3BT56 THRAP3-201ENST00000354618 4432 ntAPPRIS P2 TSL 1 (best) BASIC8.3□□□□□ -1.08
CHKB-CPT1BH3BT56 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC8.3□□□□□ -1.08
CHKB-CPT1BH3BT56 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC8.3□□□□□ -1.08
CHKB-CPT1BH3BT56 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC8.3□□□□□ -1.08
CHKB-CPT1BH3BT56 PTPRH-202ENST00000376350 3877 ntAPPRIS P3 TSL 1 (best) BASIC8.3□□□□□ -1.08
CHKB-CPT1BH3BT56 FOSB-203ENST00000443841 3346 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
CHKB-CPT1BH3BT56 BTF3L4-201ENST00000313334 4703 ntAPPRIS P2 TSL 1 (best) BASIC8.3□□□□□ -1.08
CHKB-CPT1BH3BT56 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC8.3□□□□□ -1.08
CHKB-CPT1BH3BT56 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC8.3□□□□□ -1.08
CHKB-CPT1BH3BT56 CPNE4-201ENST00000429747 4184 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
CHKB-CPT1BH3BT56 TIPARP-202ENST00000461166 4181 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
CHKB-CPT1BH3BT56 TRPS1-201ENST00000220888 5480 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
CHKB-CPT1BH3BT56 CCDC126-202ENST00000409765 2324 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
CHKB-CPT1BH3BT56 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC8.3□□□□□ -1.08
CHKB-CPT1BH3BT56 FAM102A-203ENST00000373095 4144 ntAPPRIS P1 TSL 5 BASIC8.3□□□□□ -1.08
CHKB-CPT1BH3BT56 U82695.1-201ENST00000635752 1889 ntBASIC8.3□□□□□ -1.08
CHKB-CPT1BH3BT56 SECISBP2-202ENST00000375807 3462 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
CHKB-CPT1BH3BT56 ZNF341-201ENST00000342427 3661 ntAPPRIS P3 TSL 1 (best) BASIC8.3□□□□□ -1.08
CHKB-CPT1BH3BT56 CLASP2-209ENST00000468888 6978 ntAPPRIS ALT2 TSL 5 BASIC8.3□□□□□ -1.08
CHKB-CPT1BH3BT56 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC8.3□□□□□ -1.08
CHKB-CPT1BH3BT56 TRIM3-203ENST00000525074 3044 ntAPPRIS P1 TSL 2 BASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 GOSR2-235ENST00000640269 2190 ntTSL 5 BASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 CLINT1-206ENST00000523094 3987 ntTSL 2 BASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 GGA3-214ENST00000582717 2255 ntTSL 2 BASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 SLC5A11-202ENST00000424767 2399 ntTSL 2 BASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 RTEL1-211ENST00000508582 4273 ntTSL 2 BASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 DHX30-207ENST00000457607 3748 ntTSL 5 BASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 DAPK1-219ENST00000622514 5772 ntAPPRIS P1 TSL 5 BASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 FAM90A11P-201ENST00000518378 2218 ntBASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 LINC00893-215ENST00000618757 2347 ntTSL 2 BASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 KCNMA1-241ENST00000638606 3852 ntAPPRIS ALT2 TSL 5 BASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 KCNMA1-279ENST00000640182 3852 ntAPPRIS ALT2 TSL 5 BASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 SFI1-208ENST00000432498 4162 ntAPPRIS ALT2 TSL 1 (best) BASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 PTCHD3-201ENST00000438700 2529 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 PRKCG-201ENST00000263431 3133 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 ARHGEF26-201ENST00000356448 5254 ntAPPRIS P1 TSL 2 BASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 ASCC3-204ENST00000369162 8146 ntAPPRIS P1 TSL 5 BASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 WDR53-204ENST00000433160 887 ntTSL 5 BASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 KRT18P48-201ENST00000434763 852 ntBASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 FDX2-207ENST00000494368 584 ntTSL 4 BASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 BX088651.1-201ENST00000540551 451 ntBASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 OAS3-207ENST00000551007 998 ntTSL 2 BASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 AC005837.3-201ENST00000612163 286 ntBASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 AC010654.1-201ENST00000615722 808 ntBASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 INO80E-214ENST00000620599 515 ntTSL 2 BASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 NUP98-204ENST00000397004 3923 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC8.29□□□□□ -1.08
CHKB-CPT1BH3BT56 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC8.29□□□□□ -1.08
Retrieved 100 of 98,524 protein–RNA pairs in 68.1 ms