RNA–Protein interactions for RNA: ENST00000429747.5

CPNE4-201, Transcript of copine 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPNE4, Length 4,184 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4-201ENST00000429747 NISCHQ9Y2I1 1504 aa23.05■■□□□ 1.28
CPNE4-201ENST00000429747 DCAF8L2P0C7V8 631 aa21.64■■□□□ 1.06
CPNE4-201ENST00000429747 SUPT5HO00267 1087 aaKnown RBP21.52■■□□□ 1.04
CPNE4-201ENST00000429747 SHROOM4Q9ULL8 1493 aa21.44■■□□□ 1.02
CPNE4-201ENST00000429747 PCGF6Q9BYE7 350 aa20.53■□□□□ 0.88
CPNE4-201ENST00000429747 EHMT2Q96KQ7 1210 aa20.38■□□□□ 0.85
CPNE4-201ENST00000429747 FAM9AQ8IZU1 332 aaPredicted RBP20.13■□□□□ 0.81
CPNE4-201ENST00000429747 CHIC1Q5VXU3 224 aa20.07■□□□□ 0.8
CPNE4-201ENST00000429747 HRCP23327 699 aa20.06■□□□□ 0.8
CPNE4-201ENST00000429747 LOC105371045A0A1W2PR82 267 aa19.89■□□□□ 0.77
CPNE4-201ENST00000429747 TRIM41Q8WV44 630 aa19.85■□□□□ 0.77
CPNE4-201ENST00000429747 PPARGC1BQ86YN6 1023 aaKnown RBP19.82■□□□□ 0.76
CPNE4-201ENST00000429747 TTBK1Q5TCY1 1321 aaPredicted RBP19.73■□□□□ 0.75
CPNE4-201ENST00000429747 TRIM26Q12899 539 aaPredicted RBP19.69■□□□□ 0.74
CPNE4-201ENST00000429747 ZEB1P37275 1124 aaPredicted RBP19.68■□□□□ 0.74
CPNE4-201ENST00000429747 CCER1Q8TC90 406 aaPredicted RBP19.53■□□□□ 0.72
CPNE4-201ENST00000429747 APLP2Q06481 763 aa19.32■□□□□ 0.68
CPNE4-201ENST00000429747 ZCCHC6Q5VYS8 1495 aaKnown RBP19.31■□□□□ 0.68
CPNE4-201ENST00000429747 CENPBP07199 599 aaPredicted RBP19.29■□□□□ 0.68
CPNE4-201ENST00000429747 MYO15BQ96JP2 1530 aa19.25■□□□□ 0.67
CPNE4-201ENST00000429747 UBTFP17480 764 aaKnown RBP19.25■□□□□ 0.67
CPNE4-201ENST00000429747 RANGAP1P46060 587 aaPredicted RBP19.25■□□□□ 0.67
CPNE4-201ENST00000429747 PELP1Q8IZL8 1130 aaKnown RBP19.23■□□□□ 0.67
CPNE4-201ENST00000429747 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.13■□□□□ 0.65
CPNE4-201ENST00000429747 YTHDC1Q96MU7 727 aaKnown RBP19.11■□□□□ 0.65
CPNE4-201ENST00000429747 DCAF1Q9Y4B6 1507 aa19.01■□□□□ 0.63
CPNE4-201ENST00000429747 DIEXFQ68CQ4 756 aaKnown RBP18.89■□□□□ 0.61
CPNE4-201ENST00000429747 HNRNPUL2Q1KMD3 747 aaKnown RBP18.88■□□□□ 0.61
CPNE4-201ENST00000429747 CCDC180Q9P1Z9 1646 aa18.83■□□□□ 0.61
CPNE4-201ENST00000429747 ABCC9O60706 1549 aa18.78■□□□□ 0.6
CPNE4-201ENST00000429747 GTF3C3Q9Y5Q9 886 aa18.7■□□□□ 0.58
CPNE4-201ENST00000429747 ATP1B4Q9UN42 357 aaPredicted RBP18.68■□□□□ 0.58
CPNE4-201ENST00000429747 SCRIBQ14160 1630 aa18.67■□□□□ 0.58
CPNE4-201ENST00000429747 ITGAEP38570 1179 aa18.62■□□□□ 0.57
CPNE4-201ENST00000429747 ACIN1Q9UKV3 1341 aaKnown RBP18.62■□□□□ 0.57
CPNE4-201ENST00000429747 RSF1Q96T23 1441 aaPredicted RBP18.58■□□□□ 0.56
CPNE4-201ENST00000429747 SCAF1Q9H7N4 1312 aaKnown RBP18.57■□□□□ 0.56
CPNE4-201ENST00000429747 PABPN1Q86U42 306 aaKnown RBP eCLIP18.54■□□□□ 0.56
CPNE4-201ENST00000429747 MYT1Q01538 1121 aa18.52■□□□□ 0.56
CPNE4-201ENST00000429747 ZNF316A6NFI3 1004 aaPredicted RBP18.51■□□□□ 0.55
CPNE4-201ENST00000429747 CSRNP3Q8WYN3 585 aa18.49■□□□□ 0.55
CPNE4-201ENST00000429747 NEUROD1Q13562 356 aa18.47■□□□□ 0.55
CPNE4-201ENST00000429747 NEFLP07196 543 aa18.39■□□□□ 0.54
CPNE4-201ENST00000429747 ERICH6Q7L0X2 663 aa18.24■□□□□ 0.51
CPNE4-201ENST00000429747 CECR2Q9BXF3 1484 aa18.2■□□□□ 0.5
CPNE4-201ENST00000429747 RB1CC1Q8TDY2 1594 aa18.18■□□□□ 0.5
CPNE4-201ENST00000429747 FAM50AQ14320 339 aaKnown RBP18.16■□□□□ 0.5
CPNE4-201ENST00000429747 MIER1Q8N108 512 aa18.16■□□□□ 0.5
CPNE4-201ENST00000429747 CEP162Q5TB80 1403 aa18.15■□□□□ 0.5
CPNE4-201ENST00000429747 BCANQ96GW7 911 aa18.14■□□□□ 0.49
CPNE4-201ENST00000429747 MROH2BQ7Z745 1585 aa18■□□□□ 0.47
CPNE4-201ENST00000429747 TNIKQ9UKE5 1360 aa17.99■□□□□ 0.47
CPNE4-201ENST00000429747 CLIP1P30622 1438 aa17.99■□□□□ 0.47
CPNE4-201ENST00000429747 CNGB1Q14028 1251 aaPredicted RBP17.99■□□□□ 0.47
CPNE4-201ENST00000429747 P3H3Q8IVL6 736 aa17.97■□□□□ 0.47
CPNE4-201ENST00000429747 SOGA1O94964 1423 aa17.95■□□□□ 0.46
CPNE4-201ENST00000429747 POLR3GLQ9BT43 218 aa17.94■□□□□ 0.46
CPNE4-201ENST00000429747 NACADO15069 1562 aa17.93■□□□□ 0.46
CPNE4-201ENST00000429747 GOLGA3Q08378 1498 aa17.93■□□□□ 0.46
CPNE4-201ENST00000429747 EEA1Q15075 1411 aa17.92■□□□□ 0.46
CPNE4-201ENST00000429747 ANP32CO43423 234 aa17.89■□□□□ 0.45
CPNE4-201ENST00000429747 WRNQ14191 1432 aaPredicted RBP eCLIP17.88■□□□□ 0.45
CPNE4-201ENST00000429747 CCDC88BA6NC98 1476 aa17.86■□□□□ 0.45
CPNE4-201ENST00000429747 DDX10Q13206 875 aaKnown RBP17.85■□□□□ 0.45
CPNE4-201ENST00000429747 ABCC8Q09428 1581 aa17.85■□□□□ 0.45
CPNE4-201ENST00000429747 BAZ1AQ9NRL2 1556 aaPredicted RBP17.84■□□□□ 0.45
CPNE4-201ENST00000429747 TRIM52Q96A61 297 aa17.82■□□□□ 0.44
CPNE4-201ENST00000429747 FKBP8Q14318 412 aa17.81■□□□□ 0.44
CPNE4-201ENST00000429747 WIZO95785 1651 aa17.78■□□□□ 0.44
CPNE4-201ENST00000429747 CLSPNQ9HAW4 1339 aa17.76■□□□□ 0.43
CPNE4-201ENST00000429747 CEP164Q9UPV0 1460 aa17.76■□□□□ 0.43
CPNE4-201ENST00000429747 HIRIP3Q9BW71 556 aaPredicted RBP17.74■□□□□ 0.43
CPNE4-201ENST00000429747 ARID3CA6NKF2 412 aa17.65■□□□□ 0.42
CPNE4-201ENST00000429747 CDK11AQ9UQ88 783 aaPredicted RBP17.64■□□□□ 0.41
CPNE4-201ENST00000429747 TONSLQ96HA7 1378 aa17.63■□□□□ 0.41
CPNE4-201ENST00000429747 RUSC2Q8N2Y8 1516 aa17.62■□□□□ 0.41
CPNE4-201ENST00000429747 VPS8Q8N3P4 1428 aa17.6■□□□□ 0.41
CPNE4-201ENST00000429747 ZNF326Q5BKZ1 582 aaKnown RBP17.6■□□□□ 0.41
CPNE4-201ENST00000429747 HNRNPUQ00839 825 aaKnown RBP eCLIP17.6■□□□□ 0.41
CPNE4-201ENST00000429747 SUPT16HQ9Y5B9 1047 aaKnown RBP17.58■□□□□ 0.41
CPNE4-201ENST00000429747 BAZ1BQ9UIG0 1483 aaKnown RBP17.58■□□□□ 0.4
CPNE4-201ENST00000429747 KANK4Q5T7N3 995 aaPredicted RBP17.58■□□□□ 0.4
CPNE4-201ENST00000429747 SIN3AQ96ST3 1273 aa17.55■□□□□ 0.4
CPNE4-201ENST00000429747 TOP2AP11388 1531 aaKnown RBP17.53■□□□□ 0.4
CPNE4-201ENST00000429747 CHIC2Q9UKJ5 165 aa17.51■□□□□ 0.39
CPNE4-201ENST00000429747 IRX6P78412 446 aaPredicted RBP17.5■□□□□ 0.39
CPNE4-201ENST00000429747 KIF27Q86VH2 1401 aa17.48■□□□□ 0.39
CPNE4-201ENST00000429747 CCNB3Q8WWL7 1395 aa17.48■□□□□ 0.39
CPNE4-201ENST00000429747 FAM9BQ8IZU0 186 aa17.47■□□□□ 0.39
CPNE4-201ENST00000429747 RAPGEF2Q9Y4G8 1499 aa17.42■□□□□ 0.38
CPNE4-201ENST00000429747 RTL5Q5HYW3 569 aaPredicted RBP17.42■□□□□ 0.38
CPNE4-201ENST00000429747 MTUS2Q5JR59 1369 aa17.42■□□□□ 0.38
CPNE4-201ENST00000429747 DAXXQ9UER7 740 aaPredicted RBP17.39■□□□□ 0.37
CPNE4-201ENST00000429747 RRP7BPQ9NSQ0 103 aa17.37■□□□□ 0.37
CPNE4-201ENST00000429747 ANP32EQ9BTT0 268 aa17.36■□□□□ 0.37
CPNE4-201ENST00000429747 SMARCA4P51532 1647 aa17.35■□□□□ 0.37
CPNE4-201ENST00000429747 ZNF777Q9ULD5 760 aaPredicted RBP17.35■□□□□ 0.37
CPNE4-201ENST00000429747 DHX57Q6P158 1386 aaKnown RBP17.34■□□□□ 0.37
CPNE4-201ENST00000429747 MRS2Q9HD23 443 aa17.34■□□□□ 0.37
CPNE4-201ENST00000429747 KCNH8Q96L42 1107 aa17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 149.5 ms