Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC15.08■□□□□ 0
TM9SF3Q9HD45 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC15.08■□□□□ 0
TM9SF3Q9HD45 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC15.08■□□□□ 0
TM9SF3Q9HD45 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TM9SF3Q9HD45 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TM9SF3Q9HD45 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC15.08■□□□□ 0
TM9SF3Q9HD45 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
TM9SF3Q9HD45 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC15.08■□□□□ 0
TM9SF3Q9HD45 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TM9SF3Q9HD45 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC15.08■□□□□ 0
TM9SF3Q9HD45 POM121L8P-201ENST00000417732 1281 ntBASIC15.08■□□□□ 0
TM9SF3Q9HD45 POM121L9P-203ENST00000441984 1285 ntBASIC15.08■□□□□ 0
TM9SF3Q9HD45 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC15.08■□□□□ 0
TM9SF3Q9HD45 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC15.08■□□□□ 0
TM9SF3Q9HD45 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC15.08■□□□□ 0
TM9SF3Q9HD45 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC15.08■□□□□ 0
TM9SF3Q9HD45 SAMD11P1-201ENST00000571429 661 ntBASIC15.08■□□□□ 0
TM9SF3Q9HD45 RN7SL713P-201ENST00000582127 302 ntBASIC15.08■□□□□ 0
TM9SF3Q9HD45 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC15.08■□□□□ 0
TM9SF3Q9HD45 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC15.08■□□□□ 0
TM9SF3Q9HD45 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC15.08■□□□□ 0
TM9SF3Q9HD45 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
TM9SF3Q9HD45 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TM9SF3Q9HD45 CICP13-201ENST00000422015 2789 ntBASIC15.08■□□□□ 0
TM9SF3Q9HD45 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TM9SF3Q9HD45 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
TM9SF3Q9HD45 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TM9SF3Q9HD45 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC15.08■□□□□ 0
TM9SF3Q9HD45 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC15.08■□□□□ 0
TM9SF3Q9HD45 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
TM9SF3Q9HD45 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TM9SF3Q9HD45 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TM9SF3Q9HD45 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
TM9SF3Q9HD45 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC15.08■□□□□ 0
TM9SF3Q9HD45 AC127383.1-201ENST00000444697 1800 ntBASIC15.08■□□□□ 0
TM9SF3Q9HD45 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TM9SF3Q9HD45 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC15.08■□□□□ 0
TM9SF3Q9HD45 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC15.07■□□□□ 0
TM9SF3Q9HD45 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC15.07■□□□□ 0
TM9SF3Q9HD45 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC15.07■□□□□ 0
TM9SF3Q9HD45 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TM9SF3Q9HD45 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC15.07■□□□□ 0
TM9SF3Q9HD45 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
TM9SF3Q9HD45 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TM9SF3Q9HD45 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TM9SF3Q9HD45 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC15.07■□□□□ 0
TM9SF3Q9HD45 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TM9SF3Q9HD45 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC15.07■□□□□ 0
TM9SF3Q9HD45 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC15.07■□□□□ 0
TM9SF3Q9HD45 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
TM9SF3Q9HD45 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
TM9SF3Q9HD45 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TM9SF3Q9HD45 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC15.07■□□□□ 0
TM9SF3Q9HD45 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC15.07■□□□□ 0
TM9SF3Q9HD45 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC15.07■□□□□ 0
TM9SF3Q9HD45 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC15.07■□□□□ 0
TM9SF3Q9HD45 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TM9SF3Q9HD45 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC15.07■□□□□ 0
TM9SF3Q9HD45 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC15.07■□□□□ 0
TM9SF3Q9HD45 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC15.07■□□□□ 0
TM9SF3Q9HD45 NDUFAB1P1-201ENST00000404262 460 ntBASIC15.07■□□□□ 0
TM9SF3Q9HD45 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC15.07■□□□□ 0
TM9SF3Q9HD45 HNRNPA1P63-201ENST00000427917 963 ntBASIC15.07■□□□□ 0
TM9SF3Q9HD45 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC15.07■□□□□ 0
TM9SF3Q9HD45 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC15.07■□□□□ 0
TM9SF3Q9HD45 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC15.07■□□□□ 0
TM9SF3Q9HD45 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC15.07■□□□□ 0
TM9SF3Q9HD45 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC15.07■□□□□ 0
TM9SF3Q9HD45 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC15.07■□□□□ 0
TM9SF3Q9HD45 AC073413.1-201ENST00000603927 732 ntBASIC15.07■□□□□ 0
TM9SF3Q9HD45 AC007663.3-201ENST00000609632 465 ntBASIC15.07■□□□□ 0
TM9SF3Q9HD45 DIO1-215ENST00000610607 796 ntTSL 5 BASIC15.07■□□□□ 0
TM9SF3Q9HD45 AL645728.2-202ENST00000641679 227 ntBASIC15.07■□□□□ 0
TM9SF3Q9HD45 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
TM9SF3Q9HD45 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TM9SF3Q9HD45 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC15.07■□□□□ 0
TM9SF3Q9HD45 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TM9SF3Q9HD45 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC15.07■□□□□ 0
TM9SF3Q9HD45 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC15.07■□□□□ 0
TM9SF3Q9HD45 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
TM9SF3Q9HD45 API5-202ENST00000420461 2009 ntTSL 2 BASIC15.07■□□□□ 0
TM9SF3Q9HD45 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
TM9SF3Q9HD45 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
TM9SF3Q9HD45 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TM9SF3Q9HD45 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TM9SF3Q9HD45 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
TM9SF3Q9HD45 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
TM9SF3Q9HD45 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
TM9SF3Q9HD45 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC15.06■□□□□ 0
TM9SF3Q9HD45 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC15.06■□□□□ 0
TM9SF3Q9HD45 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
TM9SF3Q9HD45 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC15.06■□□□□ 0
TM9SF3Q9HD45 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
TM9SF3Q9HD45 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
TM9SF3Q9HD45 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC15.06■□□□□ 0
TM9SF3Q9HD45 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC15.06■□□□□ 0
TM9SF3Q9HD45 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC15.06■□□□□ 0
TM9SF3Q9HD45 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC15.06■□□□□ 0
TM9SF3Q9HD45 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
TM9SF3Q9HD45 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms