Protein–RNA interactions for Protein: Q99758

ABCA3, ATP-binding cassette sub-family A member 3, humanhuman

Predictions only

Length 1,704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3Q99758 TMEM95-201ENST00000330767 1169 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
ABCA3Q99758 ZNF614-202ENST00000356322 1293 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
ABCA3Q99758 EEF1DP2-201ENST00000433698 843 ntBASIC19.28■□□□□ 0.68
ABCA3Q99758 IFI35-204ENST00000438323 1232 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
ABCA3Q99758 FAM32A-204ENST00000588367 798 ntTSL 2 BASIC19.28■□□□□ 0.68
ABCA3Q99758 PNPT1-207ENST00000625249 216 ntTSL 5 BASIC19.28■□□□□ 0.68
ABCA3Q99758 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
ABCA3Q99758 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC19.28■□□□□ 0.68
ABCA3Q99758 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC19.28■□□□□ 0.68
ABCA3Q99758 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
ABCA3Q99758 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
ABCA3Q99758 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
ABCA3Q99758 CTSV-201ENST00000259470 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
ABCA3Q99758 OXSM-201ENST00000280701 1519 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
ABCA3Q99758 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC19.28■□□□□ 0.68
ABCA3Q99758 MPI-203ENST00000535694 1523 ntTSL 2 BASIC19.28■□□□□ 0.68
ABCA3Q99758 RPF1-201ENST00000370654 1385 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
ABCA3Q99758 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
ABCA3Q99758 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
ABCA3Q99758 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
ABCA3Q99758 OPN1SW-201ENST00000249389 1096 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
ABCA3Q99758 MED11-201ENST00000293777 833 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
ABCA3Q99758 KRT18P4-201ENST00000422599 1288 ntBASIC19.28■□□□□ 0.68
ABCA3Q99758 AL157832.2-206ENST00000428178 601 ntTSL 3 BASIC19.28■□□□□ 0.68
ABCA3Q99758 RN7SL767P-201ENST00000493013 295 ntBASIC19.28■□□□□ 0.68
ABCA3Q99758 PTOV1-AS2-203ENST00000601893 719 ntTSL 4 BASIC19.28■□□□□ 0.68
ABCA3Q99758 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
ABCA3Q99758 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
ABCA3Q99758 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
ABCA3Q99758 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC19.27■□□□□ 0.68
ABCA3Q99758 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
ABCA3Q99758 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
ABCA3Q99758 AC005906.2-205ENST00000640862 1522 ntTSL 5 BASIC19.27■□□□□ 0.68
ABCA3Q99758 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
ABCA3Q99758 KCTD18-202ENST00000409157 2556 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
ABCA3Q99758 AL365181.1-201ENST00000564032 1828 ntBASIC19.27■□□□□ 0.68
ABCA3Q99758 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC19.27■□□□□ 0.68
ABCA3Q99758 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC19.27■□□□□ 0.68
ABCA3Q99758 CLCC1-202ENST00000348264 1124 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
ABCA3Q99758 CCDC12-202ENST00000425441 1097 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
ABCA3Q99758 HNRNPA1P2-207ENST00000432375 960 ntBASIC19.27■□□□□ 0.68
ABCA3Q99758 AL512622.1-202ENST00000443922 478 ntTSL 3 BASIC19.27■□□□□ 0.68
ABCA3Q99758 AC068057.1-201ENST00000453322 709 ntTSL 2 BASIC19.27■□□□□ 0.68
ABCA3Q99758 LINC00892-203ENST00000454385 686 ntTSL 3 BASIC19.27■□□□□ 0.68
ABCA3Q99758 KLF3-AS1-203ENST00000504219 627 ntTSL 3 BASIC19.27■□□□□ 0.68
ABCA3Q99758 AC068831.5-201ENST00000557387 328 ntBASIC19.27■□□□□ 0.68
ABCA3Q99758 GOLGA2P7-209ENST00000560408 745 ntBASIC19.27■□□□□ 0.68
ABCA3Q99758 LOXL1-AS1-207ENST00000565689 735 ntTSL 3 BASIC19.27■□□□□ 0.68
ABCA3Q99758 AC011462.4-201ENST00000616866 449 ntBASIC19.27■□□□□ 0.68
ABCA3Q99758 PSMA6-215ENST00000622405 978 ntTSL 2 BASIC19.27■□□□□ 0.68
ABCA3Q99758 LINC02199-201ENST00000506655 2702 ntBASIC19.27■□□□□ 0.67
ABCA3Q99758 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
ABCA3Q99758 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
ABCA3Q99758 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
ABCA3Q99758 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
ABCA3Q99758 SEC13-202ENST00000350697 1425 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
ABCA3Q99758 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
ABCA3Q99758 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ABCA3Q99758 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
ABCA3Q99758 ZDHHC6-201ENST00000369404 1721 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ABCA3Q99758 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ABCA3Q99758 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
ABCA3Q99758 OR52M2P-201ENST00000414298 959 ntBASIC19.26■□□□□ 0.67
ABCA3Q99758 OR51A9P-201ENST00000422578 911 ntBASIC19.26■□□□□ 0.67
ABCA3Q99758 C21orf62-204ENST00000490358 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ABCA3Q99758 SNORD3B-1-201ENST00000577988 758 ntBASIC19.26■□□□□ 0.67
ABCA3Q99758 AP005264.5-201ENST00000590066 467 ntBASIC19.26■□□□□ 0.67
ABCA3Q99758 KXD1-211ENST00000599319 707 ntAPPRIS P1 TSL 3 BASIC19.26■□□□□ 0.67
ABCA3Q99758 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ABCA3Q99758 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ABCA3Q99758 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
ABCA3Q99758 MSANTD2P1-201ENST00000445341 1368 ntBASIC19.26■□□□□ 0.67
ABCA3Q99758 MRPL55-205ENST00000366731 1423 ntTSL 2 BASIC19.26■□□□□ 0.67
ABCA3Q99758 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
ABCA3Q99758 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ABCA3Q99758 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ABCA3Q99758 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC19.26■□□□□ 0.67
ABCA3Q99758 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
ABCA3Q99758 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ABCA3Q99758 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
ABCA3Q99758 MRPL33-201ENST00000296102 518 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ABCA3Q99758 MRPL33-202ENST00000379666 404 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
ABCA3Q99758 KLHL7-204ENST00000410047 1233 ntTSL 5 BASIC19.25■□□□□ 0.67
ABCA3Q99758 LINC00339-202ENST00000416769 1077 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
ABCA3Q99758 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC19.25■□□□□ 0.67
ABCA3Q99758 PFN2-212ENST00000490975 858 ntTSL 4 BASIC19.25■□□□□ 0.67
ABCA3Q99758 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC19.25■□□□□ 0.67
ABCA3Q99758 AL590235.1-201ENST00000564650 861 ntBASIC19.25■□□□□ 0.67
ABCA3Q99758 ACSM5-206ENST00000575584 1130 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
ABCA3Q99758 NAV1-210ENST00000593583 726 ntBASIC19.25■□□□□ 0.67
ABCA3Q99758 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC19.25■□□□□ 0.67
ABCA3Q99758 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC19.25■□□□□ 0.67
ABCA3Q99758 ODCP-201ENST00000459650 1639 ntBASIC19.25■□□□□ 0.67
ABCA3Q99758 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC19.25■□□□□ 0.67
ABCA3Q99758 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC19.25■□□□□ 0.67
ABCA3Q99758 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC19.25■□□□□ 0.67
ABCA3Q99758 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
ABCA3Q99758 PAIP2-201ENST00000265192 1459 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ABCA3Q99758 BANP-204ENST00000393208 2283 ntTSL 2 BASIC19.25■□□□□ 0.67
ABCA3Q99758 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms