Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 AC005498.2-205ENST00000593218 784 ntBASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 AC239800.4-201ENST00000603712 296 ntBASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 AC007967.4-201ENST00000614700 386 ntBASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 AJ011932.1-201ENST00000621707 465 ntBASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 KIAA0895L-201ENST00000290881 3550 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 AL607033.1-201ENST00000623900 1599 ntBASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 ABLIM2-213ENST00000514025 2974 ntTSL 2 BASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
DEPDC4Q8N2C3 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
DEPDC4Q8N2C3 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
DEPDC4Q8N2C3 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC14.15□□□□□ -0.14
DEPDC4Q8N2C3 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
DEPDC4Q8N2C3 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
DEPDC4Q8N2C3 AC092135.3-201ENST00000624151 1846 ntBASIC14.15□□□□□ -0.14
DEPDC4Q8N2C3 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
DEPDC4Q8N2C3 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
DEPDC4Q8N2C3 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC14.15□□□□□ -0.14
DEPDC4Q8N2C3 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
DEPDC4Q8N2C3 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
DEPDC4Q8N2C3 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
DEPDC4Q8N2C3 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
DEPDC4Q8N2C3 ERVK13-1-207ENST00000569465 3321 ntTSL 2 BASIC14.15□□□□□ -0.14
DEPDC4Q8N2C3 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
DEPDC4Q8N2C3 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC14.15□□□□□ -0.14
DEPDC4Q8N2C3 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
DEPDC4Q8N2C3 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC14.15□□□□□ -0.14
DEPDC4Q8N2C3 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
DEPDC4Q8N2C3 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
DEPDC4Q8N2C3 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
DEPDC4Q8N2C3 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
DEPDC4Q8N2C3 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
DEPDC4Q8N2C3 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
DEPDC4Q8N2C3 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
DEPDC4Q8N2C3 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC14.15□□□□□ -0.14
DEPDC4Q8N2C3 CD81-202ENST00000381036 880 ntTSL 3 BASIC14.15□□□□□ -0.14
DEPDC4Q8N2C3 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
DEPDC4Q8N2C3 AL035633.1-201ENST00000406139 838 ntBASIC14.15□□□□□ -0.14
DEPDC4Q8N2C3 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC14.15□□□□□ -0.14
DEPDC4Q8N2C3 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC14.15□□□□□ -0.14
DEPDC4Q8N2C3 AC027369.6-201ENST00000525520 931 ntBASIC14.15□□□□□ -0.14
DEPDC4Q8N2C3 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC14.15□□□□□ -0.14
DEPDC4Q8N2C3 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC14.15□□□□□ -0.14
DEPDC4Q8N2C3 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
DEPDC4Q8N2C3 AC006387.1-201ENST00000626365 671 ntTSL 5 BASIC14.15□□□□□ -0.14
DEPDC4Q8N2C3 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
DEPDC4Q8N2C3 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
DEPDC4Q8N2C3 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
DEPDC4Q8N2C3 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC14.15□□□□□ -0.14
DEPDC4Q8N2C3 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
DEPDC4Q8N2C3 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
DEPDC4Q8N2C3 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC14.15□□□□□ -0.14
DEPDC4Q8N2C3 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC14.15□□□□□ -0.14
DEPDC4Q8N2C3 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC14.15□□□□□ -0.14
DEPDC4Q8N2C3 TET3-201ENST00000305799 5174 ntTSL 5 BASIC14.15□□□□□ -0.14
DEPDC4Q8N2C3 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
DEPDC4Q8N2C3 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
DEPDC4Q8N2C3 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
DEPDC4Q8N2C3 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
DEPDC4Q8N2C3 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
DEPDC4Q8N2C3 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
DEPDC4Q8N2C3 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
DEPDC4Q8N2C3 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
DEPDC4Q8N2C3 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
DEPDC4Q8N2C3 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
DEPDC4Q8N2C3 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
DEPDC4Q8N2C3 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC14.14□□□□□ -0.15
DEPDC4Q8N2C3 AP000845.1-201ENST00000581677 2131 ntBASIC14.14□□□□□ -0.15
DEPDC4Q8N2C3 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
DEPDC4Q8N2C3 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC14.14□□□□□ -0.15
DEPDC4Q8N2C3 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
DEPDC4Q8N2C3 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC14.14□□□□□ -0.15
DEPDC4Q8N2C3 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
DEPDC4Q8N2C3 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC14.14□□□□□ -0.15
DEPDC4Q8N2C3 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC14.14□□□□□ -0.15
DEPDC4Q8N2C3 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
DEPDC4Q8N2C3 PPP6R2P1-201ENST00000450880 1275 ntBASIC14.14□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms