Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AC091812.2-201ENST00000619081 385 ntBASIC12.62□□□□□ -0.39
HOXA1P49639 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC12.62□□□□□ -0.39
HOXA1P49639 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HOXA1P49639 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HOXA1P49639 ZFP36L2-201ENST00000282388 3696 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HOXA1P49639 FAM189A2-204ENST00000455972 2107 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
HOXA1P49639 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
HOXA1P49639 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC12.62□□□□□ -0.39
HOXA1P49639 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
HOXA1P49639 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC12.62□□□□□ -0.39
HOXA1P49639 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
HOXA1P49639 SEMA6D-208ENST00000558014 6028 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
HOXA1P49639 CMIP-208ENST00000566462 3512 ntTSL 4 BASIC12.62□□□□□ -0.39
HOXA1P49639 STAG3-206ENST00000426455 4450 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
HOXA1P49639 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
HOXA1P49639 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HOXA1P49639 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC12.62□□□□□ -0.39
HOXA1P49639 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
HOXA1P49639 OSBPL5-201ENST00000263650 3889 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HOXA1P49639 AP5Z1-201ENST00000348624 2901 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
HOXA1P49639 GALNT4-201ENST00000529983 5399 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
HOXA1P49639 LHX6-210ENST00000559895 3587 ntTSL 2 BASIC12.61□□□□□ -0.39
HOXA1P49639 CEP68-202ENST00000377990 5847 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXA1P49639 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC12.61□□□□□ -0.39
HOXA1P49639 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXA1P49639 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXA1P49639 GPRC5A-201ENST00000014914 7362 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXA1P49639 MICAL1-202ENST00000358807 3645 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXA1P49639 KRT42P-202ENST00000438131 2895 ntTSL 2 BASIC12.61□□□□□ -0.39
HOXA1P49639 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
HOXA1P49639 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXA1P49639 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
HOXA1P49639 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
HOXA1P49639 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXA1P49639 SLC29A4-201ENST00000297195 2839 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXA1P49639 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXA1P49639 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC12.61□□□□□ -0.39
HOXA1P49639 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXA1P49639 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXA1P49639 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC12.61□□□□□ -0.39
HOXA1P49639 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXA1P49639 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
HOXA1P49639 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
HOXA1P49639 SPDYE11-202ENST00000450699 704 ntBASIC12.61□□□□□ -0.39
HOXA1P49639 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC12.61□□□□□ -0.39
HOXA1P49639 AC009078.2-202ENST00000463353 338 ntBASIC12.61□□□□□ -0.39
HOXA1P49639 RNF34-208ENST00000555076 593 ntTSL 3 BASIC12.61□□□□□ -0.39
HOXA1P49639 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC12.61□□□□□ -0.39
HOXA1P49639 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXA1P49639 SPDYE9P-201ENST00000570642 692 ntBASIC12.61□□□□□ -0.39
HOXA1P49639 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC12.61□□□□□ -0.39
HOXA1P49639 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC12.61□□□□□ -0.39
HOXA1P49639 SPDYE10P-202ENST00000612005 668 ntBASIC12.61□□□□□ -0.39
HOXA1P49639 SPDYE8P-202ENST00000612377 668 ntBASIC12.61□□□□□ -0.39
HOXA1P49639 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC12.61□□□□□ -0.39
HOXA1P49639 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC12.61□□□□□ -0.39
HOXA1P49639 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC12.61□□□□□ -0.39
HOXA1P49639 USP19-208ENST00000453664 4719 ntAPPRIS ALT2 TSL 2 BASIC12.61□□□□□ -0.39
HOXA1P49639 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC12.61□□□□□ -0.39
HOXA1P49639 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXA1P49639 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC12.61□□□□□ -0.39
HOXA1P49639 DSTN-201ENST00000246069 3617 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXA1P49639 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
HOXA1P49639 DOCK4-206ENST00000437633 6212 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXA1P49639 TMEM123-201ENST00000361236 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXA1P49639 CDK12-201ENST00000430627 5918 ntAPPRIS ALT1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXA1P49639 DDX3X-201ENST00000399959 5399 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXA1P49639 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC12.61□□□□□ -0.39
HOXA1P49639 ZNF274-210ENST00000610905 2559 ntAPPRIS P4 TSL 5 BASIC12.61□□□□□ -0.39
HOXA1P49639 EML5-207ENST00000554922 9570 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
HOXA1P49639 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
HOXA1P49639 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXA1P49639 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA1P49639 OCRL-202ENST00000371113 5162 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA1P49639 HLA-E-201ENST00000376630 2601 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
HOXA1P49639 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA1P49639 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
HOXA1P49639 APAF1-202ENST00000357310 7055 ntAPPRIS ALT1 TSL 5 BASIC12.6□□□□□ -0.39
HOXA1P49639 SNHG28-201ENST00000368102 2501 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
HOXA1P49639 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA1P49639 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
HOXA1P49639 GORASP1-201ENST00000319283 3722 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA1P49639 POU2F2-202ENST00000389341 6901 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA1P49639 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA1P49639 PNKD-203ENST00000273077 3021 ntAPPRIS P4 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA1P49639 IKZF1-204ENST00000349824 5757 ntTSL 5 BASIC12.6□□□□□ -0.39
HOXA1P49639 CAMSAP3-201ENST00000160298 3889 ntAPPRIS P3 TSL 2 BASIC12.6□□□□□ -0.39
HOXA1P49639 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
HOXA1P49639 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
HOXA1P49639 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA1P49639 EDEM3-202ENST00000367512 6678 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA1P49639 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA1P49639 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA1P49639 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA1P49639 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA1P49639 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA1P49639 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC12.6□□□□□ -0.39
HOXA1P49639 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC12.6□□□□□ -0.39
HOXA1P49639 LBH-204ENST00000406087 559 ntTSL 4 BASIC12.6□□□□□ -0.39
HOXA1P49639 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC12.6□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 90.3 ms