Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC13.34□□□□□ -0.27
SOX2P48431 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
SOX2P48431 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC13.34□□□□□ -0.27
SOX2P48431 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC13.34□□□□□ -0.27
SOX2P48431 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SOX2P48431 CARMIL2-202ENST00000545661 4119 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
SOX2P48431 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SOX2P48431 TNFAIP8L1-202ENST00000536716 3845 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
SOX2P48431 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SOX2P48431 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC13.34□□□□□ -0.27
SOX2P48431 PPP6R2-202ENST00000359139 4035 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
SOX2P48431 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SOX2P48431 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SOX2P48431 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
SOX2P48431 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
SOX2P48431 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
SOX2P48431 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
SOX2P48431 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC13.34□□□□□ -0.27
SOX2P48431 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SOX2P48431 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
SOX2P48431 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SOX2P48431 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SOX2P48431 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SOX2P48431 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
SOX2P48431 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC13.34□□□□□ -0.27
SOX2P48431 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
SOX2P48431 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SOX2P48431 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
SOX2P48431 AC104457.1-201ENST00000401024 814 ntBASIC13.34□□□□□ -0.27
SOX2P48431 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC13.34□□□□□ -0.27
SOX2P48431 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC13.34□□□□□ -0.27
SOX2P48431 SERBP1P3-201ENST00000459980 809 ntBASIC13.34□□□□□ -0.27
SOX2P48431 KRT18P43-201ENST00000469825 1281 ntBASIC13.34□□□□□ -0.27
SOX2P48431 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC13.34□□□□□ -0.27
SOX2P48431 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
SOX2P48431 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC13.34□□□□□ -0.27
SOX2P48431 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC13.34□□□□□ -0.27
SOX2P48431 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC13.34□□□□□ -0.27
SOX2P48431 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SOX2P48431 AL033527.5-202ENST00000641632 1098 ntBASIC13.34□□□□□ -0.27
SOX2P48431 AL645728.2-202ENST00000641679 227 ntBASIC13.34□□□□□ -0.27
SOX2P48431 SPECC1L-ADORA2A-201ENST00000358654 6204 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
SOX2P48431 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
SOX2P48431 ARHGEF37-201ENST00000333677 4968 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
SOX2P48431 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
SOX2P48431 PES1-204ENST00000402284 2144 ntTSL 5 BASIC13.34□□□□□ -0.27
SOX2P48431 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
SOX2P48431 CYP2AB1P-202ENST00000454440 1456 ntBASIC13.34□□□□□ -0.27
SOX2P48431 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC13.34□□□□□ -0.27
SOX2P48431 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC13.34□□□□□ -0.27
SOX2P48431 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SOX2P48431 AL356275.1-201ENST00000638446 7440 ntTSL 5 BASIC13.34□□□□□ -0.27
SOX2P48431 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
SOX2P48431 DPYSL2-204ENST00000521913 4805 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
SOX2P48431 STRC-205ENST00000450892 5680 ntAPPRIS P2 TSL 5 BASIC13.34□□□□□ -0.27
SOX2P48431 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SOX2P48431 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC13.34□□□□□ -0.27
SOX2P48431 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
SOX2P48431 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
SOX2P48431 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SOX2P48431 UBA5-202ENST00000356232 3705 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SOX2P48431 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
SOX2P48431 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
SOX2P48431 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SOX2P48431 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SOX2P48431 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
SOX2P48431 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
SOX2P48431 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
SOX2P48431 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC13.33□□□□□ -0.27
SOX2P48431 SMARCA2-204ENST00000357248 5855 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.27
SOX2P48431 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
SOX2P48431 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
SOX2P48431 UMODL1-204ENST00000400427 5442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
SOX2P48431 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
SOX2P48431 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC13.33□□□□□ -0.28
SOX2P48431 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC13.33□□□□□ -0.28
SOX2P48431 PSMC1-201ENST00000261303 4448 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SOX2P48431 PDXK-210ENST00000468090 7297 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
SOX2P48431 AC015802.1-201ENST00000588104 1449 ntBASIC13.33□□□□□ -0.28
SOX2P48431 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
SOX2P48431 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SOX2P48431 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
SOX2P48431 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
SOX2P48431 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SOX2P48431 STOM-202ENST00000347359 870 ntTSL 2 BASIC13.33□□□□□ -0.28
SOX2P48431 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SOX2P48431 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SOX2P48431 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SOX2P48431 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC13.33□□□□□ -0.28
SOX2P48431 AL080243.2-201ENST00000418783 582 ntBASIC13.33□□□□□ -0.28
SOX2P48431 RPP21-221ENST00000428040 594 ntTSL 2 BASIC13.33□□□□□ -0.28
SOX2P48431 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SOX2P48431 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC13.33□□□□□ -0.28
SOX2P48431 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
SOX2P48431 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
SOX2P48431 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC13.33□□□□□ -0.28
SOX2P48431 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC13.33□□□□□ -0.28
SOX2P48431 MIR4469-201ENST00000583919 79 ntBASIC13.33□□□□□ -0.28
SOX2P48431 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC13.33□□□□□ -0.28
SOX2P48431 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms