Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 WFDC1-204ENST00000613603 549 ntBASIC14.68□□□□□ -0.06
HNF4AP41235 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
HNF4AP41235 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC14.68□□□□□ -0.06
HNF4AP41235 PRSS30P-206ENST00000641773 873 ntBASIC14.68□□□□□ -0.06
HNF4AP41235 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HNF4AP41235 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HNF4AP41235 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HNF4AP41235 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HNF4AP41235 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HNF4AP41235 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
HNF4AP41235 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HNF4AP41235 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
HNF4AP41235 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC14.68□□□□□ -0.06
HNF4AP41235 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
HNF4AP41235 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC14.68□□□□□ -0.06
HNF4AP41235 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC14.68□□□□□ -0.06
HNF4AP41235 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC14.68□□□□□ -0.06
HNF4AP41235 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HNF4AP41235 GSN-203ENST00000373808 2664 ntTSL 2 BASIC14.68□□□□□ -0.06
HNF4AP41235 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HNF4AP41235 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
HNF4AP41235 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
HNF4AP41235 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HNF4AP41235 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC14.67□□□□□ -0.06
HNF4AP41235 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HNF4AP41235 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HNF4AP41235 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC14.67□□□□□ -0.06
HNF4AP41235 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
HNF4AP41235 AC232323.1-201ENST00000540724 2099 ntBASIC14.67□□□□□ -0.06
HNF4AP41235 REXO1L5P-201ENST00000622260 2098 ntBASIC14.67□□□□□ -0.06
HNF4AP41235 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
HNF4AP41235 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
HNF4AP41235 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HNF4AP41235 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC14.67□□□□□ -0.06
HNF4AP41235 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HNF4AP41235 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC14.67□□□□□ -0.06
HNF4AP41235 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC14.67□□□□□ -0.06
HNF4AP41235 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
HNF4AP41235 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HNF4AP41235 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HNF4AP41235 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
HNF4AP41235 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HNF4AP41235 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HNF4AP41235 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
HNF4AP41235 HLA-K-203ENST00000430151 1046 ntBASIC14.67□□□□□ -0.06
HNF4AP41235 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC14.67□□□□□ -0.06
HNF4AP41235 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HNF4AP41235 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC14.67□□□□□ -0.06
HNF4AP41235 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HNF4AP41235 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC14.67□□□□□ -0.06
HNF4AP41235 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC14.67□□□□□ -0.06
HNF4AP41235 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
HNF4AP41235 RDX-218ENST00000544551 4117 ntTSL 2 BASIC14.67□□□□□ -0.06
HNF4AP41235 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HNF4AP41235 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HNF4AP41235 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
HNF4AP41235 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HNF4AP41235 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
HNF4AP41235 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
HNF4AP41235 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
HNF4AP41235 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HNF4AP41235 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HNF4AP41235 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HNF4AP41235 KRT8P22-201ENST00000562317 1415 ntBASIC14.66□□□□□ -0.06
HNF4AP41235 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HNF4AP41235 AMT-204ENST00000427987 1646 ntTSL 5 BASIC14.66□□□□□ -0.06
HNF4AP41235 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC14.66□□□□□ -0.06
HNF4AP41235 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HNF4AP41235 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC14.66□□□□□ -0.06
HNF4AP41235 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
HNF4AP41235 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
HNF4AP41235 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
HNF4AP41235 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HNF4AP41235 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
HNF4AP41235 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HNF4AP41235 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HNF4AP41235 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC14.66□□□□□ -0.06
HNF4AP41235 AC018442.1-201ENST00000421439 2061 ntBASIC14.66□□□□□ -0.06
HNF4AP41235 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC14.66□□□□□ -0.06
HNF4AP41235 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC14.66□□□□□ -0.06
HNF4AP41235 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
HNF4AP41235 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
HNF4AP41235 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HNF4AP41235 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HNF4AP41235 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HNF4AP41235 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HNF4AP41235 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC14.66□□□□□ -0.06
HNF4AP41235 SOCS2P1-201ENST00000417727 557 ntBASIC14.66□□□□□ -0.06
HNF4AP41235 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC14.66□□□□□ -0.06
HNF4AP41235 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
HNF4AP41235 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
HNF4AP41235 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC14.66□□□□□ -0.06
HNF4AP41235 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HNF4AP41235 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC14.66□□□□□ -0.06
HNF4AP41235 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC14.66□□□□□ -0.06
HNF4AP41235 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HNF4AP41235 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC14.66□□□□□ -0.06
HNF4AP41235 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HNF4AP41235 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HNF4AP41235 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms