Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 PPFIA4-203ENST00000367240 6434 ntAPPRIS P5 TSL 5 BASIC15.22■□□□□ 0.03
VIMP08670 GRIN1-202ENST00000371546 4114 ntTSL 5 BASIC15.22■□□□□ 0.03
VIMP08670 COL20A1-203ENST00000422202 8097 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
VIMP08670 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC15.22■□□□□ 0.03
VIMP08670 PRDM16-201ENST00000270722 8690 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
VIMP08670 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
VIMP08670 PDE1C-205ENST00000396191 2952 ntAPPRIS ALT1 TSL 2 BASIC15.21■□□□□ 0.03
VIMP08670 TMCC2-201ENST00000329800 2818 ntTSL 2 BASIC15.21■□□□□ 0.03
VIMP08670 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC15.21■□□□□ 0.03
VIMP08670 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
VIMP08670 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
VIMP08670 HADH-202ENST00000403312 1752 ntTSL 5 BASIC15.21■□□□□ 0.03
VIMP08670 ZBTB45P1-201ENST00000452761 1456 ntBASIC15.21■□□□□ 0.03
VIMP08670 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
VIMP08670 BSG-215ENST00000618006 1329 ntTSL 2 BASIC15.21■□□□□ 0.03
VIMP08670 GRK3-201ENST00000324198 9103 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
VIMP08670 ACAP2-201ENST00000326793 7160 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
VIMP08670 TKFC-201ENST00000394900 4696 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
VIMP08670 MLX-202ENST00000346833 2334 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
VIMP08670 STX16-207ENST00000371141 4937 ntAPPRIS P3 TSL 2 BASIC15.21■□□□□ 0.03
VIMP08670 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
VIMP08670 LDLRAD2-201ENST00000344642 4012 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
VIMP08670 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
VIMP08670 KRBA2-202ENST00000396267 2562 ntTSL 2 BASIC15.21■□□□□ 0.03
VIMP08670 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC15.21■□□□□ 0.03
VIMP08670 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
VIMP08670 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC15.21■□□□□ 0.03
VIMP08670 AL359643.2-201ENST00000606227 3273 ntTSL 2 BASIC15.21■□□□□ 0.03
VIMP08670 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
VIMP08670 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
VIMP08670 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
VIMP08670 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
VIMP08670 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
VIMP08670 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
VIMP08670 PP14571-201ENST00000404327 934 ntTSL 2 BASIC15.21■□□□□ 0.03
VIMP08670 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
VIMP08670 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC15.21■□□□□ 0.03
VIMP08670 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC15.21■□□□□ 0.03
VIMP08670 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC15.21■□□□□ 0.03
VIMP08670 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC15.21■□□□□ 0.03
VIMP08670 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC15.21■□□□□ 0.03
VIMP08670 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC15.21■□□□□ 0.03
VIMP08670 FXR1-221ENST00000491674 365 ntTSL 2 BASIC15.21■□□□□ 0.03
VIMP08670 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
VIMP08670 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
VIMP08670 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
VIMP08670 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC15.21■□□□□ 0.03
VIMP08670 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC15.21■□□□□ 0.03
VIMP08670 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC15.21■□□□□ 0.03
VIMP08670 IFNL4P1-201ENST00000607083 540 ntBASIC15.21■□□□□ 0.03
VIMP08670 TP73-AS1-207ENST00000624167 988 ntBASIC15.21■□□□□ 0.03
VIMP08670 AL354702.1-201ENST00000442006 1960 ntBASIC15.21■□□□□ 0.03
VIMP08670 AC113189.2-201ENST00000575310 1975 ntTSL 2 BASIC15.21■□□□□ 0.03
VIMP08670 RIMBP2-201ENST00000261655 6321 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
VIMP08670 SLC16A1-201ENST00000369626 3910 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
VIMP08670 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
VIMP08670 IGHG3-202ENST00000641136 2751 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
VIMP08670 AC051649.2-201ENST00000640310 3319 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
VIMP08670 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
VIMP08670 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC15.21■□□□□ 0.02
VIMP08670 SAFB-211ENST00000592224 3014 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
VIMP08670 NOX5-201ENST00000260364 8592 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
VIMP08670 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC15.21■□□□□ 0.02
VIMP08670 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.02
VIMP08670 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.02
VIMP08670 BCAR1-208ENST00000542031 2846 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.02
VIMP08670 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
VIMP08670 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VIMP08670 ACADM-218ENST00000541113 2535 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
VIMP08670 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
VIMP08670 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
VIMP08670 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
VIMP08670 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VIMP08670 MIR497HG-202ENST00000572453 3838 ntBASIC15.2■□□□□ 0.02
VIMP08670 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VIMP08670 MTF2-202ENST00000370303 1951 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
VIMP08670 ARHGEF17-201ENST00000263674 7853 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VIMP08670 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
VIMP08670 HAL-202ENST00000538703 2637 ntTSL 2 BASIC15.2■□□□□ 0.02
VIMP08670 CX3CL1-204ENST00000565912 5796 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
VIMP08670 COL6A1-207ENST00000612273 3251 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
VIMP08670 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
VIMP08670 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
VIMP08670 CRY2-202ENST00000443527 4203 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
VIMP08670 RAVER1-206ENST00000611074 3586 ntAPPRIS P2 TSL 5 BASIC15.2■□□□□ 0.02
VIMP08670 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC15.2■□□□□ 0.02
VIMP08670 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
VIMP08670 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
VIMP08670 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VIMP08670 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC15.2■□□□□ 0.02
VIMP08670 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC15.2■□□□□ 0.02
VIMP08670 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC15.2■□□□□ 0.02
VIMP08670 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC15.2■□□□□ 0.02
VIMP08670 BMF-207ENST00000559701 630 ntTSL 3 BASIC15.2■□□□□ 0.02
VIMP08670 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
VIMP08670 CMC2-214ENST00000565925 640 ntTSL 5 BASIC15.2■□□□□ 0.02
VIMP08670 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
VIMP08670 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC15.2■□□□□ 0.02
VIMP08670 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC15.2■□□□□ 0.02
VIMP08670 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 111.8 ms