Protein–RNA interactions for Protein: Q9NWW5

CLN6, Ceroid-lipofuscinosis neuronal protein 6, humanhuman

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6Q9NWW5 HIST3H2BA-201ENST00000436555 524 ntBASIC13.84□□□□□ -0.19
CLN6Q9NWW5 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC13.84□□□□□ -0.19
CLN6Q9NWW5 AL592309.1-201ENST00000443127 649 ntBASIC13.84□□□□□ -0.19
CLN6Q9NWW5 AC069335.1-201ENST00000489972 472 ntBASIC13.84□□□□□ -0.19
CLN6Q9NWW5 SLED1-202ENST00000512051 380 ntBASIC13.84□□□□□ -0.19
CLN6Q9NWW5 AC022447.6-201ENST00000515522 438 ntBASIC13.84□□□□□ -0.19
CLN6Q9NWW5 SLC25A1P1-201ENST00000528351 927 ntBASIC13.84□□□□□ -0.19
CLN6Q9NWW5 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC13.84□□□□□ -0.19
CLN6Q9NWW5 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC13.84□□□□□ -0.19
CLN6Q9NWW5 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC13.84□□□□□ -0.19
CLN6Q9NWW5 WAPL-201ENST00000263070 5987 ntTSL 5 BASIC13.84□□□□□ -0.19
CLN6Q9NWW5 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CLN6Q9NWW5 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
CLN6Q9NWW5 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
CLN6Q9NWW5 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
CLN6Q9NWW5 POM121-205ENST00000627934 5480 ntAPPRIS P3 TSL 5 BASIC13.84□□□□□ -0.19
CLN6Q9NWW5 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
CLN6Q9NWW5 ZNF800-203ENST00000393313 4358 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
CLN6Q9NWW5 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
CLN6Q9NWW5 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
CLN6Q9NWW5 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CLN6Q9NWW5 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC13.84□□□□□ -0.19
CLN6Q9NWW5 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC13.84□□□□□ -0.19
CLN6Q9NWW5 DENND3-211ENST00000519811 5482 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
CLN6Q9NWW5 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
CLN6Q9NWW5 DNM1-212ENST00000627543 4734 ntAPPRIS ALT1 TSL 5 BASIC13.83□□□□□ -0.19
CLN6Q9NWW5 CICP17-201ENST00000418553 2377 ntBASIC13.83□□□□□ -0.19
CLN6Q9NWW5 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
CLN6Q9NWW5 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.19
CLN6Q9NWW5 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.19
CLN6Q9NWW5 CA12-201ENST00000178638 6413 ntAPPRIS P4 TSL 1 (best) BASIC13.83□□□□□ -0.19
CLN6Q9NWW5 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
CLN6Q9NWW5 AC089987.1-201ENST00000551654 2209 ntBASIC13.83□□□□□ -0.2
CLN6Q9NWW5 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC13.83□□□□□ -0.2
CLN6Q9NWW5 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLN6Q9NWW5 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLN6Q9NWW5 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC13.83□□□□□ -0.2
CLN6Q9NWW5 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CLN6Q9NWW5 ANKH-201ENST00000284268 8203 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLN6Q9NWW5 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
CLN6Q9NWW5 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC13.83□□□□□ -0.2
CLN6Q9NWW5 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLN6Q9NWW5 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
CLN6Q9NWW5 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLN6Q9NWW5 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
CLN6Q9NWW5 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLN6Q9NWW5 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLN6Q9NWW5 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLN6Q9NWW5 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLN6Q9NWW5 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLN6Q9NWW5 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLN6Q9NWW5 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
CLN6Q9NWW5 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLN6Q9NWW5 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC13.83□□□□□ -0.2
CLN6Q9NWW5 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC13.83□□□□□ -0.2
CLN6Q9NWW5 MCCD1P2-201ENST00000423228 335 ntBASIC13.83□□□□□ -0.2
CLN6Q9NWW5 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CLN6Q9NWW5 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC13.83□□□□□ -0.2
CLN6Q9NWW5 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CLN6Q9NWW5 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC13.83□□□□□ -0.2
CLN6Q9NWW5 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC13.83□□□□□ -0.2
CLN6Q9NWW5 TBCB-211ENST00000589996 724 ntTSL 3 BASIC13.83□□□□□ -0.2
CLN6Q9NWW5 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC13.83□□□□□ -0.2
CLN6Q9NWW5 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC13.83□□□□□ -0.2
CLN6Q9NWW5 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC13.83□□□□□ -0.2
CLN6Q9NWW5 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CLN6Q9NWW5 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLN6Q9NWW5 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLN6Q9NWW5 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CLN6Q9NWW5 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC13.83□□□□□ -0.2
CLN6Q9NWW5 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CLN6Q9NWW5 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC13.83□□□□□ -0.2
CLN6Q9NWW5 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC13.83□□□□□ -0.2
CLN6Q9NWW5 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC13.83□□□□□ -0.2
CLN6Q9NWW5 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLN6Q9NWW5 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC13.83□□□□□ -0.2
CLN6Q9NWW5 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC13.83□□□□□ -0.2
CLN6Q9NWW5 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLN6Q9NWW5 SATB2-211ENST00000614512 4972 ntTSL 5 BASIC13.83□□□□□ -0.2
CLN6Q9NWW5 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLN6Q9NWW5 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLN6Q9NWW5 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLN6Q9NWW5 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
CLN6Q9NWW5 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC13.82□□□□□ -0.2
CLN6Q9NWW5 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC13.82□□□□□ -0.2
CLN6Q9NWW5 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLN6Q9NWW5 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CLN6Q9NWW5 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC13.82□□□□□ -0.2
CLN6Q9NWW5 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
CLN6Q9NWW5 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLN6Q9NWW5 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
CLN6Q9NWW5 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC13.82□□□□□ -0.2
CLN6Q9NWW5 EPHA5-204ENST00000511294 5176 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLN6Q9NWW5 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC13.82□□□□□ -0.2
CLN6Q9NWW5 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
CLN6Q9NWW5 ALX4-201ENST00000329255 5750 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLN6Q9NWW5 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLN6Q9NWW5 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLN6Q9NWW5 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC13.82□□□□□ -0.2
CLN6Q9NWW5 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 84.5 ms