Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
NKX3-1Q99801 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC13.25□□□□□ -0.29
NKX3-1Q99801 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
NKX3-1Q99801 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
NKX3-1Q99801 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC13.25□□□□□ -0.29
NKX3-1Q99801 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
NKX3-1Q99801 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
NKX3-1Q99801 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
NKX3-1Q99801 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC13.25□□□□□ -0.29
NKX3-1Q99801 RPL37AP1-201ENST00000412502 279 ntBASIC13.25□□□□□ -0.29
NKX3-1Q99801 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC13.25□□□□□ -0.29
NKX3-1Q99801 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC13.25□□□□□ -0.29
NKX3-1Q99801 HMGN1P19-201ENST00000436976 333 ntBASIC13.25□□□□□ -0.29
NKX3-1Q99801 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC13.25□□□□□ -0.29
NKX3-1Q99801 SATB1-217ENST00000493952 626 ntTSL 3 BASIC13.25□□□□□ -0.29
NKX3-1Q99801 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC13.25□□□□□ -0.29
NKX3-1Q99801 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC13.25□□□□□ -0.29
NKX3-1Q99801 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC13.25□□□□□ -0.29
NKX3-1Q99801 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC13.25□□□□□ -0.29
NKX3-1Q99801 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
NKX3-1Q99801 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC13.25□□□□□ -0.29
NKX3-1Q99801 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
NKX3-1Q99801 AC025048.3-201ENST00000590609 569 ntBASIC13.25□□□□□ -0.29
NKX3-1Q99801 AC093512.1-201ENST00000617969 520 ntBASIC13.25□□□□□ -0.29
NKX3-1Q99801 AC005702.4-201ENST00000618393 416 ntBASIC13.25□□□□□ -0.29
NKX3-1Q99801 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC13.25□□□□□ -0.29
NKX3-1Q99801 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
NKX3-1Q99801 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
NKX3-1Q99801 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
NKX3-1Q99801 CTBP1-AS2-206ENST00000581398 5652 ntBASIC13.25□□□□□ -0.29
NKX3-1Q99801 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC13.25□□□□□ -0.29
NKX3-1Q99801 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
NKX3-1Q99801 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC13.25□□□□□ -0.29
NKX3-1Q99801 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
NKX3-1Q99801 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
NKX3-1Q99801 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
NKX3-1Q99801 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC13.25□□□□□ -0.29
NKX3-1Q99801 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
NKX3-1Q99801 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC13.25□□□□□ -0.29
NKX3-1Q99801 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC13.25□□□□□ -0.29
NKX3-1Q99801 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
NKX3-1Q99801 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
NKX3-1Q99801 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC13.25□□□□□ -0.29
NKX3-1Q99801 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
NKX3-1Q99801 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
NKX3-1Q99801 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
NKX3-1Q99801 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
NKX3-1Q99801 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC13.24□□□□□ -0.29
NKX3-1Q99801 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
NKX3-1Q99801 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC13.24□□□□□ -0.29
NKX3-1Q99801 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC13.24□□□□□ -0.29
NKX3-1Q99801 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC13.24□□□□□ -0.29
NKX3-1Q99801 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
NKX3-1Q99801 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC13.24□□□□□ -0.29
NKX3-1Q99801 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC13.24□□□□□ -0.29
NKX3-1Q99801 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
NKX3-1Q99801 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC13.24□□□□□ -0.29
NKX3-1Q99801 LRRC8D-201ENST00000337338 3950 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
NKX3-1Q99801 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
NKX3-1Q99801 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
NKX3-1Q99801 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
NKX3-1Q99801 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC13.24□□□□□ -0.29
NKX3-1Q99801 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
NKX3-1Q99801 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
NKX3-1Q99801 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
NKX3-1Q99801 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC13.24□□□□□ -0.29
NKX3-1Q99801 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC13.24□□□□□ -0.29
NKX3-1Q99801 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
NKX3-1Q99801 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
NKX3-1Q99801 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC13.24□□□□□ -0.29
NKX3-1Q99801 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC13.24□□□□□ -0.29
NKX3-1Q99801 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC13.24□□□□□ -0.29
NKX3-1Q99801 AL512361.1-201ENST00000554200 418 ntBASIC13.24□□□□□ -0.29
NKX3-1Q99801 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
NKX3-1Q99801 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
NKX3-1Q99801 AC011467.4-201ENST00000594891 528 ntBASIC13.24□□□□□ -0.29
NKX3-1Q99801 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
NKX3-1Q99801 AC009093.7-201ENST00000623853 1223 ntBASIC13.24□□□□□ -0.29
NKX3-1Q99801 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC13.24□□□□□ -0.29
NKX3-1Q99801 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
NKX3-1Q99801 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
NKX3-1Q99801 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
NKX3-1Q99801 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
NKX3-1Q99801 ANGPTL2-202ENST00000373425 3707 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
NKX3-1Q99801 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
NKX3-1Q99801 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
NKX3-1Q99801 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
NKX3-1Q99801 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
NKX3-1Q99801 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
NKX3-1Q99801 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC13.24□□□□□ -0.29
NKX3-1Q99801 TK1-203ENST00000588734 1681 ntTSL 2 BASIC13.24□□□□□ -0.29
NKX3-1Q99801 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
NKX3-1Q99801 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
NKX3-1Q99801 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
NKX3-1Q99801 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC13.24□□□□□ -0.29
NKX3-1Q99801 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
NKX3-1Q99801 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
NKX3-1Q99801 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
NKX3-1Q99801 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC13.23□□□□□ -0.29
NKX3-1Q99801 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms