Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 TMA16-204ENST00000508268 608 ntTSL 2 BASIC12.84□□□□□ -0.35
COL12A1Q99715 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
COL12A1Q99715 INO80E-209ENST00000567254 625 ntTSL 2 BASIC12.84□□□□□ -0.35
COL12A1Q99715 AP000322.3-201ENST00000608665 388 ntBASIC12.84□□□□□ -0.35
COL12A1Q99715 PDHB-201ENST00000302746 1527 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL12A1Q99715 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC12.84□□□□□ -0.35
COL12A1Q99715 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
COL12A1Q99715 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL12A1Q99715 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
COL12A1Q99715 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC12.84□□□□□ -0.35
COL12A1Q99715 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
COL12A1Q99715 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
COL12A1Q99715 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL12A1Q99715 AL360270.3-201ENST00000609118 1348 ntBASIC12.84□□□□□ -0.35
COL12A1Q99715 ILF3-AS1-201ENST00000591501 1983 ntBASIC12.84□□□□□ -0.35
COL12A1Q99715 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.35
COL12A1Q99715 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC12.83□□□□□ -0.36
COL12A1Q99715 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL12A1Q99715 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL12A1Q99715 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
COL12A1Q99715 OR10N1P-201ENST00000392758 869 ntBASIC12.83□□□□□ -0.36
COL12A1Q99715 AC103923.1-201ENST00000453229 1228 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
COL12A1Q99715 AL162377.1-202ENST00000456688 1181 ntTSL 2 BASIC12.83□□□□□ -0.36
COL12A1Q99715 AC004889.1-205ENST00000493248 531 ntTSL 4 BASIC12.83□□□□□ -0.36
COL12A1Q99715 OR2A1-AS1-210ENST00000496968 531 ntBASIC12.83□□□□□ -0.36
COL12A1Q99715 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC12.83□□□□□ -0.36
COL12A1Q99715 ANAPC15-204ENST00000535234 848 ntAPPRIS P3 TSL 2 BASIC12.83□□□□□ -0.36
COL12A1Q99715 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC12.83□□□□□ -0.36
COL12A1Q99715 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC12.83□□□□□ -0.36
COL12A1Q99715 PDCD6-213ENST00000618970 931 ntTSL 3 BASIC12.83□□□□□ -0.36
COL12A1Q99715 NF1P11-201ENST00000621292 1282 ntBASIC12.83□□□□□ -0.36
COL12A1Q99715 AP000769.1-203ENST00000637245 208 ntBASIC12.83□□□□□ -0.36
COL12A1Q99715 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL12A1Q99715 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC12.83□□□□□ -0.36
COL12A1Q99715 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL12A1Q99715 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL12A1Q99715 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC12.83□□□□□ -0.36
COL12A1Q99715 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL12A1Q99715 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL12A1Q99715 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC12.83□□□□□ -0.36
COL12A1Q99715 MAD2L1BP-201ENST00000372171 1301 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL12A1Q99715 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL12A1Q99715 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL12A1Q99715 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
COL12A1Q99715 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL12A1Q99715 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL12A1Q99715 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
COL12A1Q99715 AC112504.1-201ENST00000623415 1841 ntBASIC12.83□□□□□ -0.36
COL12A1Q99715 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL12A1Q99715 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC12.83□□□□□ -0.36
COL12A1Q99715 ECH1-201ENST00000221418 1411 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL12A1Q99715 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL12A1Q99715 EZH2-202ENST00000350995 2477 ntAPPRIS ALT1 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL12A1Q99715 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
COL12A1Q99715 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL12A1Q99715 IKBKB-223ENST00000522147 954 ntTSL 5 BASIC12.83□□□□□ -0.36
COL12A1Q99715 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
COL12A1Q99715 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
COL12A1Q99715 AC093503.1-201ENST00000593888 495 ntTSL 3 BASIC12.83□□□□□ -0.36
COL12A1Q99715 LINC00528-201ENST00000600723 2160 ntBASIC12.83□□□□□ -0.36
COL12A1Q99715 NEK4P3-201ENST00000604859 544 ntBASIC12.83□□□□□ -0.36
COL12A1Q99715 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL12A1Q99715 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
COL12A1Q99715 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC12.83□□□□□ -0.36
COL12A1Q99715 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
COL12A1Q99715 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL12A1Q99715 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
COL12A1Q99715 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC12.83□□□□□ -0.36
COL12A1Q99715 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL12A1Q99715 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC12.83□□□□□ -0.36
COL12A1Q99715 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
COL12A1Q99715 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
COL12A1Q99715 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL12A1Q99715 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL12A1Q99715 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
COL12A1Q99715 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL12A1Q99715 PGLYRP3-201ENST00000290722 1173 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL12A1Q99715 MRPL18-201ENST00000367034 978 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL12A1Q99715 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL12A1Q99715 RN7SL582P-201ENST00000491078 279 ntBASIC12.82□□□□□ -0.36
COL12A1Q99715 AC114947.1-202ENST00000514136 344 ntBASIC12.82□□□□□ -0.36
COL12A1Q99715 AC013553.1-201ENST00000560906 267 ntBASIC12.82□□□□□ -0.36
COL12A1Q99715 TMEM202-AS1-201ENST00000562573 723 ntTSL 3 BASIC12.82□□□□□ -0.36
COL12A1Q99715 EFHD1-207ENST00000611312 1490 ntTSL 5 BASIC12.82□□□□□ -0.36
COL12A1Q99715 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL12A1Q99715 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL12A1Q99715 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL12A1Q99715 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL12A1Q99715 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC12.82□□□□□ -0.36
COL12A1Q99715 NECTIN1-203ENST00000341398 1377 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
COL12A1Q99715 MYBPHL-201ENST00000357155 1372 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL12A1Q99715 WASH3P-207ENST00000560956 1394 ntBASIC12.82□□□□□ -0.36
COL12A1Q99715 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC12.82□□□□□ -0.36
COL12A1Q99715 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL12A1Q99715 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
COL12A1Q99715 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL12A1Q99715 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL12A1Q99715 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL12A1Q99715 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC12.82□□□□□ -0.36
COL12A1Q99715 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC12.82□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms