Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
HMGA1P17096 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
HMGA1P17096 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
HMGA1P17096 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
HMGA1P17096 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
HMGA1P17096 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
HMGA1P17096 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
HMGA1P17096 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
HMGA1P17096 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC15.46■□□□□ 0.07
HMGA1P17096 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC15.46■□□□□ 0.07
HMGA1P17096 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
HMGA1P17096 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
HMGA1P17096 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
HMGA1P17096 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC15.46■□□□□ 0.07
HMGA1P17096 IMP3P2-201ENST00000489760 475 ntBASIC15.46■□□□□ 0.07
HMGA1P17096 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC15.46■□□□□ 0.07
HMGA1P17096 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC15.46■□□□□ 0.07
HMGA1P17096 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC15.46■□□□□ 0.07
HMGA1P17096 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC15.46■□□□□ 0.07
HMGA1P17096 PAM16-211ENST00000575848 518 ntTSL 3 BASIC15.46■□□□□ 0.07
HMGA1P17096 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
HMGA1P17096 CU633904.3-201ENST00000624042 1029 ntBASIC15.46■□□□□ 0.07
HMGA1P17096 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
HMGA1P17096 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
HMGA1P17096 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
HMGA1P17096 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
HMGA1P17096 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
HMGA1P17096 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC15.46■□□□□ 0.07
HMGA1P17096 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
HMGA1P17096 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC15.46■□□□□ 0.07
HMGA1P17096 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
HMGA1P17096 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
HMGA1P17096 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
HMGA1P17096 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC15.46■□□□□ 0.07
HMGA1P17096 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
HMGA1P17096 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC15.46■□□□□ 0.06
HMGA1P17096 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC15.46■□□□□ 0.06
HMGA1P17096 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
HMGA1P17096 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
HMGA1P17096 MRPL37P1-201ENST00000592451 1337 ntBASIC15.45■□□□□ 0.06
HMGA1P17096 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC15.45■□□□□ 0.06
HMGA1P17096 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC15.45■□□□□ 0.06
HMGA1P17096 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
HMGA1P17096 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
HMGA1P17096 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
HMGA1P17096 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC15.45■□□□□ 0.06
HMGA1P17096 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
HMGA1P17096 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
HMGA1P17096 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
HMGA1P17096 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
HMGA1P17096 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
HMGA1P17096 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
HMGA1P17096 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
HMGA1P17096 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
HMGA1P17096 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
HMGA1P17096 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
HMGA1P17096 RN7SKP214-201ENST00000364208 315 ntBASIC15.45■□□□□ 0.06
HMGA1P17096 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
HMGA1P17096 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC15.45■□□□□ 0.06
HMGA1P17096 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC15.45■□□□□ 0.06
HMGA1P17096 Z97180.1-201ENST00000445173 988 ntBASIC15.45■□□□□ 0.06
HMGA1P17096 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC15.45■□□□□ 0.06
HMGA1P17096 RN7SL769P-201ENST00000469386 295 ntBASIC15.45■□□□□ 0.06
HMGA1P17096 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC15.45■□□□□ 0.06
HMGA1P17096 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
HMGA1P17096 FADS2-212ENST00000522639 360 ntTSL 5 BASIC15.45■□□□□ 0.06
HMGA1P17096 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC15.45■□□□□ 0.06
HMGA1P17096 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC15.45■□□□□ 0.06
HMGA1P17096 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC15.45■□□□□ 0.06
HMGA1P17096 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC15.45■□□□□ 0.06
HMGA1P17096 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC15.45■□□□□ 0.06
HMGA1P17096 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
HMGA1P17096 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC15.45■□□□□ 0.06
HMGA1P17096 FADS2-215ENST00000574708 385 ntTSL 3 BASIC15.45■□□□□ 0.06
HMGA1P17096 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC15.45■□□□□ 0.06
HMGA1P17096 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
HMGA1P17096 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC15.45■□□□□ 0.06
HMGA1P17096 AF254983.2-201ENST00000612331 135 ntBASIC15.45■□□□□ 0.06
HMGA1P17096 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
HMGA1P17096 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
HMGA1P17096 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC15.45■□□□□ 0.06
HMGA1P17096 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
HMGA1P17096 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
HMGA1P17096 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
HMGA1P17096 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
HMGA1P17096 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC15.45■□□□□ 0.06
HMGA1P17096 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
HMGA1P17096 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
HMGA1P17096 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
HMGA1P17096 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
HMGA1P17096 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
HMGA1P17096 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
HMGA1P17096 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
HMGA1P17096 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
HMGA1P17096 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC15.44■□□□□ 0.06
HMGA1P17096 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC15.44■□□□□ 0.06
HMGA1P17096 AL157791.1-201ENST00000553667 1699 ntBASIC15.44■□□□□ 0.06
HMGA1P17096 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
HMGA1P17096 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
HMGA1P17096 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 735.6 ms