Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL6A2P12110 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL6A2P12110 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC14.94□□□□□ -0.02
COL6A2P12110 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL6A2P12110 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL6A2P12110 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL6A2P12110 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
COL6A2P12110 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL6A2P12110 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC14.94□□□□□ -0.02
COL6A2P12110 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC14.94□□□□□ -0.02
COL6A2P12110 FAM86GP-201ENST00000448322 971 ntBASIC14.94□□□□□ -0.02
COL6A2P12110 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL6A2P12110 RPL13AP25-201ENST00000484130 612 ntBASIC14.94□□□□□ -0.02
COL6A2P12110 GLI4-203ENST00000517468 963 ntTSL 5 BASIC14.94□□□□□ -0.02
COL6A2P12110 FTH1-202ENST00000526640 786 ntTSL 2 BASIC14.94□□□□□ -0.02
COL6A2P12110 AC139530.3-201ENST00000620344 690 ntBASIC14.94□□□□□ -0.02
COL6A2P12110 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
COL6A2P12110 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
COL6A2P12110 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC14.94□□□□□ -0.02
COL6A2P12110 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC14.94□□□□□ -0.02
COL6A2P12110 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC14.94□□□□□ -0.02
COL6A2P12110 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC14.94□□□□□ -0.02
COL6A2P12110 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL6A2P12110 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC14.94□□□□□ -0.02
COL6A2P12110 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC14.94□□□□□ -0.02
COL6A2P12110 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
COL6A2P12110 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC14.94□□□□□ -0.02
COL6A2P12110 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL6A2P12110 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC14.94□□□□□ -0.02
COL6A2P12110 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL6A2P12110 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL6A2P12110 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
COL6A2P12110 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL6A2P12110 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC14.94□□□□□ -0.02
COL6A2P12110 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL6A2P12110 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL6A2P12110 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
COL6A2P12110 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL6A2P12110 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL6A2P12110 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC14.94□□□□□ -0.02
COL6A2P12110 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC14.94□□□□□ -0.02
COL6A2P12110 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC14.94□□□□□ -0.02
COL6A2P12110 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL6A2P12110 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL6A2P12110 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL6A2P12110 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL6A2P12110 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC14.93□□□□□ -0.02
COL6A2P12110 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC14.93□□□□□ -0.02
COL6A2P12110 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC14.93□□□□□ -0.02
COL6A2P12110 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL6A2P12110 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC14.93□□□□□ -0.02
COL6A2P12110 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL6A2P12110 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC14.93□□□□□ -0.02
COL6A2P12110 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL6A2P12110 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
COL6A2P12110 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC14.93□□□□□ -0.02
COL6A2P12110 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL6A2P12110 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC14.93□□□□□ -0.02
COL6A2P12110 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
COL6A2P12110 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL6A2P12110 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL6A2P12110 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL6A2P12110 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL6A2P12110 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC14.93□□□□□ -0.02
COL6A2P12110 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL6A2P12110 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL6A2P12110 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC14.93□□□□□ -0.02
COL6A2P12110 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL6A2P12110 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL6A2P12110 AL359881.3-201ENST00000602640 1721 ntBASIC14.93□□□□□ -0.02
COL6A2P12110 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC14.93□□□□□ -0.02
COL6A2P12110 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL6A2P12110 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL6A2P12110 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL6A2P12110 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
COL6A2P12110 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL6A2P12110 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC14.93□□□□□ -0.02
COL6A2P12110 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC14.93□□□□□ -0.02
COL6A2P12110 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC14.93□□□□□ -0.02
COL6A2P12110 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC14.93□□□□□ -0.02
COL6A2P12110 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC14.93□□□□□ -0.02
COL6A2P12110 DUX4L47-201ENST00000566374 394 ntBASIC14.93□□□□□ -0.02
COL6A2P12110 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC14.93□□□□□ -0.02
COL6A2P12110 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC14.93□□□□□ -0.02
COL6A2P12110 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC14.93□□□□□ -0.02
COL6A2P12110 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC14.93□□□□□ -0.02
COL6A2P12110 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
COL6A2P12110 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL6A2P12110 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL6A2P12110 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL6A2P12110 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL6A2P12110 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL6A2P12110 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC14.93□□□□□ -0.02
COL6A2P12110 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
COL6A2P12110 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL6A2P12110 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL6A2P12110 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC14.93□□□□□ -0.02
COL6A2P12110 SLC20A2-208ENST00000520262 2992 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
COL6A2P12110 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
COL6A2P12110 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms