Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 TISP43-201ENST00000409793 538 ntTSL 4 BASIC16.85■□□□□ 0.29
MSH4O15457 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC16.85■□□□□ 0.29
MSH4O15457 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
MSH4O15457 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC16.85■□□□□ 0.29
MSH4O15457 NCK2-206ENST00000522586 490 ntTSL 5 BASIC16.85■□□□□ 0.29
MSH4O15457 RIT1-205ENST00000539040 919 ntTSL 2 BASIC16.85■□□□□ 0.29
MSH4O15457 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSH4O15457 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC16.85■□□□□ 0.29
MSH4O15457 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC16.85■□□□□ 0.29
MSH4O15457 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC16.85■□□□□ 0.29
MSH4O15457 AC002472.3-201ENST00000640124 621 ntBASIC16.85■□□□□ 0.29
MSH4O15457 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSH4O15457 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSH4O15457 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC16.85■□□□□ 0.29
MSH4O15457 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC16.85■□□□□ 0.29
MSH4O15457 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
MSH4O15457 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC16.85■□□□□ 0.29
MSH4O15457 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC16.85■□□□□ 0.29
MSH4O15457 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSH4O15457 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
MSH4O15457 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
MSH4O15457 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSH4O15457 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSH4O15457 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSH4O15457 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC16.85■□□□□ 0.29
MSH4O15457 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSH4O15457 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSH4O15457 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
MSH4O15457 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSH4O15457 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC16.84■□□□□ 0.29
MSH4O15457 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC16.84■□□□□ 0.29
MSH4O15457 AC007292.2-201ENST00000593524 1812 ntBASIC16.84■□□□□ 0.29
MSH4O15457 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSH4O15457 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC16.84■□□□□ 0.29
MSH4O15457 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
MSH4O15457 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSH4O15457 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
MSH4O15457 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSH4O15457 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSH4O15457 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSH4O15457 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
MSH4O15457 MIR326-201ENST00000362220 95 ntBASIC16.84■□□□□ 0.29
MSH4O15457 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC16.84■□□□□ 0.29
MSH4O15457 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
MSH4O15457 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
MSH4O15457 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSH4O15457 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC16.84■□□□□ 0.29
MSH4O15457 RPSAP36-202ENST00000494591 1261 ntBASIC16.84■□□□□ 0.29
MSH4O15457 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
MSH4O15457 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
MSH4O15457 RNF41-210ENST00000552244 716 ntTSL 3 BASIC16.84■□□□□ 0.29
MSH4O15457 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
MSH4O15457 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC16.84■□□□□ 0.29
MSH4O15457 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC16.84■□□□□ 0.29
MSH4O15457 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
MSH4O15457 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC16.84■□□□□ 0.29
MSH4O15457 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC16.84■□□□□ 0.29
MSH4O15457 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSH4O15457 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSH4O15457 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
MSH4O15457 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC16.84■□□□□ 0.29
MSH4O15457 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC16.84■□□□□ 0.29
MSH4O15457 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
MSH4O15457 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
MSH4O15457 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC16.84■□□□□ 0.29
MSH4O15457 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSH4O15457 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSH4O15457 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSH4O15457 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSH4O15457 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC16.84■□□□□ 0.29
MSH4O15457 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
MSH4O15457 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC16.83■□□□□ 0.29
MSH4O15457 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
MSH4O15457 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
MSH4O15457 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.29
MSH4O15457 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
MSH4O15457 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
MSH4O15457 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
MSH4O15457 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
MSH4O15457 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
MSH4O15457 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC16.83■□□□□ 0.28
MSH4O15457 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
MSH4O15457 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC16.83■□□□□ 0.28
MSH4O15457 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC16.83■□□□□ 0.28
MSH4O15457 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC16.83■□□□□ 0.28
MSH4O15457 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
MSH4O15457 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC16.83■□□□□ 0.28
MSH4O15457 Z93015.1-201ENST00000451718 390 ntBASIC16.83■□□□□ 0.28
MSH4O15457 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC16.83■□□□□ 0.28
MSH4O15457 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
MSH4O15457 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
MSH4O15457 CDC23-208ENST00000505120 455 ntTSL 3 BASIC16.83■□□□□ 0.28
MSH4O15457 AC100850.1-201ENST00000506768 649 ntBASIC16.83■□□□□ 0.28
MSH4O15457 GCOM2-201ENST00000509133 1104 ntBASIC16.83■□□□□ 0.28
MSH4O15457 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC16.83■□□□□ 0.28
MSH4O15457 USP35-204ENST00000530267 2419 ntTSL 2 BASIC16.83■□□□□ 0.28
MSH4O15457 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
MSH4O15457 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC16.83■□□□□ 0.28
MSH4O15457 AC013726.1-201ENST00000563747 2285 ntBASIC16.83■□□□□ 0.28
MSH4O15457 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms