Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC12.93□□□□□ -0.34
SDCBPO00560 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
SDCBPO00560 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
SDCBPO00560 MFF-204ENST00000353339 2186 ntTSL 5 BASIC12.93□□□□□ -0.34
SDCBPO00560 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
SDCBPO00560 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
SDCBPO00560 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC12.93□□□□□ -0.34
SDCBPO00560 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
SDCBPO00560 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
SDCBPO00560 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
SDCBPO00560 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC12.93□□□□□ -0.34
SDCBPO00560 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
SDCBPO00560 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC12.92□□□□□ -0.34
SDCBPO00560 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC12.92□□□□□ -0.34
SDCBPO00560 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
SDCBPO00560 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
SDCBPO00560 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
SDCBPO00560 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
SDCBPO00560 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
SDCBPO00560 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC12.92□□□□□ -0.34
SDCBPO00560 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC12.92□□□□□ -0.34
SDCBPO00560 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC12.92□□□□□ -0.34
SDCBPO00560 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
SDCBPO00560 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
SDCBPO00560 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
SDCBPO00560 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
SDCBPO00560 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
SDCBPO00560 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
SDCBPO00560 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
SDCBPO00560 BAD-202ENST00000394531 631 ntTSL 3 BASIC12.92□□□□□ -0.34
SDCBPO00560 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC12.92□□□□□ -0.34
SDCBPO00560 AC107890.1-201ENST00000422478 521 ntBASIC12.92□□□□□ -0.34
SDCBPO00560 USP40-206ENST00000443711 628 ntTSL 2 BASIC12.92□□□□□ -0.34
SDCBPO00560 AC067863.1-201ENST00000494933 530 ntBASIC12.92□□□□□ -0.34
SDCBPO00560 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC12.92□□□□□ -0.34
SDCBPO00560 SLED1-202ENST00000512051 380 ntBASIC12.92□□□□□ -0.34
SDCBPO00560 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC12.92□□□□□ -0.34
SDCBPO00560 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
SDCBPO00560 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
SDCBPO00560 BAD-207ENST00000544785 525 ntTSL 3 BASIC12.92□□□□□ -0.34
SDCBPO00560 LSM12-202ENST00000585388 942 ntTSL 3 BASIC12.92□□□□□ -0.34
SDCBPO00560 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC12.92□□□□□ -0.34
SDCBPO00560 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
SDCBPO00560 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC12.92□□□□□ -0.34
SDCBPO00560 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
SDCBPO00560 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
SDCBPO00560 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC12.92□□□□□ -0.34
SDCBPO00560 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
SDCBPO00560 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
SDCBPO00560 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC12.92□□□□□ -0.34
SDCBPO00560 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
SDCBPO00560 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC12.92□□□□□ -0.34
SDCBPO00560 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC12.92□□□□□ -0.34
SDCBPO00560 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
SDCBPO00560 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC12.92□□□□□ -0.34
SDCBPO00560 REXO1L4P-201ENST00000605109 1937 ntBASIC12.92□□□□□ -0.34
SDCBPO00560 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC12.92□□□□□ -0.34
SDCBPO00560 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
SDCBPO00560 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC12.92□□□□□ -0.34
SDCBPO00560 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
SDCBPO00560 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
SDCBPO00560 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
SDCBPO00560 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
SDCBPO00560 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC12.91□□□□□ -0.34
SDCBPO00560 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
SDCBPO00560 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC12.91□□□□□ -0.34
SDCBPO00560 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC12.91□□□□□ -0.34
SDCBPO00560 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
SDCBPO00560 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC12.91□□□□□ -0.34
SDCBPO00560 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC12.91□□□□□ -0.34
SDCBPO00560 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
SDCBPO00560 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC12.91□□□□□ -0.34
SDCBPO00560 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
SDCBPO00560 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
SDCBPO00560 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC12.91□□□□□ -0.34
SDCBPO00560 AC027369.6-201ENST00000525520 931 ntBASIC12.91□□□□□ -0.34
SDCBPO00560 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC12.91□□□□□ -0.34
SDCBPO00560 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC12.91□□□□□ -0.34
SDCBPO00560 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC12.91□□□□□ -0.34
SDCBPO00560 AP001160.2-201ENST00000596071 487 ntBASIC12.91□□□□□ -0.34
SDCBPO00560 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
SDCBPO00560 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC12.91□□□□□ -0.34
SDCBPO00560 TEX28P1-201ENST00000613479 1221 ntBASIC12.91□□□□□ -0.34
SDCBPO00560 AL138828.2-201ENST00000615812 383 ntBASIC12.91□□□□□ -0.34
SDCBPO00560 TEX28P2-201ENST00000617764 1221 ntBASIC12.91□□□□□ -0.34
SDCBPO00560 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC12.91□□□□□ -0.34
SDCBPO00560 SERF2-217ENST00000630046 862 ntTSL 5 BASIC12.91□□□□□ -0.34
SDCBPO00560 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC12.91□□□□□ -0.34
SDCBPO00560 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
SDCBPO00560 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC12.91□□□□□ -0.34
SDCBPO00560 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
SDCBPO00560 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC12.91□□□□□ -0.34
SDCBPO00560 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC12.91□□□□□ -0.34
SDCBPO00560 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
SDCBPO00560 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
SDCBPO00560 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
SDCBPO00560 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
SDCBPO00560 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
SDCBPO00560 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
SDCBPO00560 AC012508.2-201ENST00000567613 1472 ntBASIC12.91□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms