Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
COL6A5A8TX70 AC138761.6-201ENST00000583997 1423 ntBASIC11.41□□□□□ -0.58
COL6A5A8TX70 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
COL6A5A8TX70 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
COL6A5A8TX70 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC11.41□□□□□ -0.58
COL6A5A8TX70 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC11.41□□□□□ -0.58
COL6A5A8TX70 AL050341.2-201ENST00000567508 1541 ntBASIC11.41□□□□□ -0.58
COL6A5A8TX70 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC11.41□□□□□ -0.58
COL6A5A8TX70 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
COL6A5A8TX70 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
COL6A5A8TX70 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
COL6A5A8TX70 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC11.41□□□□□ -0.58
COL6A5A8TX70 PCDHB19P-201ENST00000570871 2371 ntBASIC11.41□□□□□ -0.58
COL6A5A8TX70 TAMM41-201ENST00000273037 1297 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
COL6A5A8TX70 KCNK18-201ENST00000334549 1155 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
COL6A5A8TX70 RPRD2-201ENST00000369067 1043 ntAPPRIS ALT2 TSL 2 BASIC11.4□□□□□ -0.58
COL6A5A8TX70 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
COL6A5A8TX70 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC11.4□□□□□ -0.58
COL6A5A8TX70 MIATNB-206ENST00000444388 918 ntTSL 3 BASIC11.4□□□□□ -0.58
COL6A5A8TX70 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC11.4□□□□□ -0.58
COL6A5A8TX70 AC104964.1-201ENST00000520494 489 ntTSL 2 BASIC11.4□□□□□ -0.58
COL6A5A8TX70 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
COL6A5A8TX70 IDH3A-213ENST00000559205 566 ntTSL 4 BASIC11.4□□□□□ -0.58
COL6A5A8TX70 RN7SL665P-201ENST00000578793 300 ntBASIC11.4□□□□□ -0.58
COL6A5A8TX70 AL137793.2-201ENST00000632635 659 ntTSL 3 BASIC11.4□□□□□ -0.58
COL6A5A8TX70 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
COL6A5A8TX70 FKBP4P8-201ENST00000610931 1369 ntBASIC11.4□□□□□ -0.58
COL6A5A8TX70 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
COL6A5A8TX70 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
COL6A5A8TX70 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC11.4□□□□□ -0.58
COL6A5A8TX70 AC006449.6-201ENST00000612330 2296 ntBASIC11.4□□□□□ -0.58
COL6A5A8TX70 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC11.4□□□□□ -0.58
COL6A5A8TX70 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC11.4□□□□□ -0.58
COL6A5A8TX70 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC11.4□□□□□ -0.58
COL6A5A8TX70 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
COL6A5A8TX70 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC11.4□□□□□ -0.58
COL6A5A8TX70 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
COL6A5A8TX70 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
COL6A5A8TX70 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
COL6A5A8TX70 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
COL6A5A8TX70 FDFT1-214ENST00000528812 2013 ntTSL 2 BASIC11.4□□□□□ -0.58
COL6A5A8TX70 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC11.4□□□□□ -0.58
COL6A5A8TX70 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC11.4□□□□□ -0.58
COL6A5A8TX70 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC11.4□□□□□ -0.58
COL6A5A8TX70 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC11.4□□□□□ -0.58
COL6A5A8TX70 LST1-204ENST00000376086 554 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
COL6A5A8TX70 AC099567.1-201ENST00000414418 931 ntTSL 5 BASIC11.4□□□□□ -0.58
COL6A5A8TX70 IQCF4-202ENST00000422896 745 ntTSL 2 BASIC11.4□□□□□ -0.58
COL6A5A8TX70 ALG1L15P-201ENST00000482834 794 ntBASIC11.4□□□□□ -0.58
COL6A5A8TX70 AC022121.1-201ENST00000484584 579 ntBASIC11.4□□□□□ -0.58
COL6A5A8TX70 AC008026.2-201ENST00000495438 348 ntBASIC11.4□□□□□ -0.58
COL6A5A8TX70 AP000920.1-201ENST00000531824 344 ntBASIC11.4□□□□□ -0.58
COL6A5A8TX70 SOCS2-AS1-204ENST00000551626 618 ntTSL 4 BASIC11.4□□□□□ -0.58
COL6A5A8TX70 PSMA6-215ENST00000622405 978 ntTSL 2 BASIC11.4□□□□□ -0.58
COL6A5A8TX70 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
COL6A5A8TX70 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
COL6A5A8TX70 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC11.4□□□□□ -0.58
COL6A5A8TX70 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
COL6A5A8TX70 SERF1B-204ENST00000506542 1666 ntTSL 3 BASIC11.4□□□□□ -0.58
COL6A5A8TX70 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC11.4□□□□□ -0.58
COL6A5A8TX70 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC11.4□□□□□ -0.58
COL6A5A8TX70 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
COL6A5A8TX70 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
COL6A5A8TX70 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC11.4□□□□□ -0.58
COL6A5A8TX70 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
COL6A5A8TX70 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
COL6A5A8TX70 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC11.4□□□□□ -0.58
COL6A5A8TX70 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC11.4□□□□□ -0.59
COL6A5A8TX70 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC11.4□□□□□ -0.59
COL6A5A8TX70 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC11.4□□□□□ -0.59
COL6A5A8TX70 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
COL6A5A8TX70 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
COL6A5A8TX70 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
COL6A5A8TX70 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC11.39□□□□□ -0.59
COL6A5A8TX70 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
COL6A5A8TX70 MS4A15-201ENST00000337911 1536 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
COL6A5A8TX70 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC11.39□□□□□ -0.59
COL6A5A8TX70 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
COL6A5A8TX70 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC11.39□□□□□ -0.59
COL6A5A8TX70 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC11.39□□□□□ -0.59
COL6A5A8TX70 CHCHD1-202ENST00000372837 1202 ntTSL 2 BASIC11.39□□□□□ -0.59
COL6A5A8TX70 C22orf42-201ENST00000382097 1363 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
COL6A5A8TX70 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC11.39□□□□□ -0.59
COL6A5A8TX70 AC112721.1-201ENST00000409162 588 ntTSL 3 BASIC11.39□□□□□ -0.59
COL6A5A8TX70 SNX3-204ENST00000426155 1072 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
COL6A5A8TX70 HMGA1P2-201ENST00000430198 324 ntBASIC11.39□□□□□ -0.59
COL6A5A8TX70 AC008494.1-201ENST00000497612 796 ntBASIC11.39□□□□□ -0.59
COL6A5A8TX70 AC122694.1-201ENST00000510987 563 ntTSL 4 BASIC11.39□□□□□ -0.59
COL6A5A8TX70 GABARAPL1-213ENST00000544284 531 ntTSL 3 BASIC11.39□□□□□ -0.59
COL6A5A8TX70 AC003686.1-201ENST00000550956 1034 ntBASIC11.39□□□□□ -0.59
COL6A5A8TX70 RBFOX1-214ENST00000552089 1430 ntTSL 5 BASIC11.39□□□□□ -0.59
COL6A5A8TX70 TNNI1-205ENST00000555948 580 ntTSL 5 BASIC11.39□□□□□ -0.59
COL6A5A8TX70 AC007728.1-202ENST00000564510 787 ntTSL 3 BASIC11.39□□□□□ -0.59
COL6A5A8TX70 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
COL6A5A8TX70 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC11.39□□□□□ -0.59
COL6A5A8TX70 NAT9-204ENST00000578822 839 ntTSL 3 BASIC11.39□□□□□ -0.59
COL6A5A8TX70 AC092364.2-201ENST00000596710 2692 ntBASIC11.39□□□□□ -0.59
COL6A5A8TX70 AC139713.2-207ENST00000641556 1292 ntBASIC11.39□□□□□ -0.59
COL6A5A8TX70 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC11.39□□□□□ -0.59
COL6A5A8TX70 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms