Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS4AQ9UN37 FGD5P1-202ENST00000614866 2498 ntBASIC14.73□□□□□ -0.05
VPS4AQ9UN37 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS4AQ9UN37 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
VPS4AQ9UN37 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
VPS4AQ9UN37 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
VPS4AQ9UN37 KCP-203ENST00000610776 5108 ntTSL 5 BASIC14.73□□□□□ -0.05
VPS4AQ9UN37 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
VPS4AQ9UN37 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS4AQ9UN37 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
VPS4AQ9UN37 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS4AQ9UN37 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS4AQ9UN37 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS4AQ9UN37 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC14.73□□□□□ -0.05
VPS4AQ9UN37 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
VPS4AQ9UN37 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC14.73□□□□□ -0.05
VPS4AQ9UN37 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS4AQ9UN37 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
VPS4AQ9UN37 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 APOC3-202ENST00000375345 604 ntTSL 5 BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 TMEM14DP-201ENST00000422205 345 ntBASIC14.72□□□□□ -0.05
VPS4AQ9UN37 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 SPDYE18-201ENST00000510091 1050 ntBASIC14.72□□□□□ -0.05
VPS4AQ9UN37 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 MIR6787-201ENST00000616675 61 ntBASIC14.72□□□□□ -0.05
VPS4AQ9UN37 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC14.72□□□□□ -0.05
VPS4AQ9UN37 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
VPS4AQ9UN37 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC14.71□□□□□ -0.05
VPS4AQ9UN37 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.05
VPS4AQ9UN37 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC14.71□□□□□ -0.05
VPS4AQ9UN37 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
VPS4AQ9UN37 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.05
VPS4AQ9UN37 CICP11-201ENST00000434745 2827 ntBASIC14.71□□□□□ -0.05
VPS4AQ9UN37 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
VPS4AQ9UN37 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
VPS4AQ9UN37 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC14.71□□□□□ -0.05
VPS4AQ9UN37 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
VPS4AQ9UN37 R3HDM2P2-201ENST00000401880 2116 ntBASIC14.71□□□□□ -0.05
VPS4AQ9UN37 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
VPS4AQ9UN37 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
VPS4AQ9UN37 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
VPS4AQ9UN37 AC015656.1-201ENST00000624209 3578 ntBASIC14.71□□□□□ -0.05
VPS4AQ9UN37 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
VPS4AQ9UN37 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms