Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 CD63-203ENST00000546457 607 ntTSL 218.17■□□□□ 0.53e-7■□□□□ 9.6
YBX3P16989 CLTC-205ENST00000472651 665 ntTSL 26.71□□□□□ -1.341e-10■□□□□ 9.6
YBX3P16989 HIST1H2BN-202ENST00000449538 715 ntTSL 1 (best)22.74■■□□□ 1.237e-14■□□□□ 9.6
YBX3P16989 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC21.15■□□□□ 0.987e-14■□□□□ 9.6
YBX3P16989 HIST1H2BN-203ENST00000606613 4137 ntTSL 1 (best) BASIC8.1□□□□□ -1.117e-14■□□□□ 9.6
YBX3P16989 UTP4-211ENST00000567460 595 ntTSL 431.5■■■□□ 2.632e-7■□□□□ 9.6
YBX3P16989 GNB1L-204ENST00000453108 702 ntTSL 326.3■■□□□ 1.82e-7■□□□□ 9.6
YBX3P16989 GNB1L-206ENST00000481086 854 ntTSL 326.21■■□□□ 1.792e-7■□□□□ 9.6
YBX3P16989 THAP7-203ENST00000466670 1080 ntTSL 525.3■■□□□ 1.648e-11■□□□□ 9.6
YBX3P16989 WRB-203ENST00000380713 768 ntTSL 325.1■■□□□ 1.613e-9■□□□□ 9.6
YBX3P16989 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.62e-7■□□□□ 9.6
YBX3P16989 GNB1L-205ENST00000460402 1197 ntTSL 324.11■■□□□ 1.452e-7■□□□□ 9.6
YBX3P16989 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC23.89■■□□□ 1.412e-7■□□□□ 9.6
YBX3P16989 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.293e-9■□□□□ 9.6
YBX3P16989 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC22.96■■□□□ 1.272e-7■□□□□ 9.6
YBX3P16989 UTP4-213ENST00000568448 562 ntTSL 421.92■■□□□ 1.12e-7■□□□□ 9.6
YBX3P16989 WRB-204ENST00000398753 699 ntTSL 3 BASIC21.74■■□□□ 1.073e-9■□□□□ 9.6
YBX3P16989 CLASP2-223ENST00000496954 685 ntTSL 420.91■□□□□ 0.942e-7■□□□□ 9.6
YBX3P16989 RPP40-206ENST00000483546 654 ntTSL 319.92■□□□□ 0.782e-7■□□□□ 9.6
YBX3P16989 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC19.92■□□□□ 0.782e-7■□□□□ 9.6
YBX3P16989 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC19.7■□□□□ 0.742e-7■□□□□ 9.6
YBX3P16989 RPP40-204ENST00000468105 632 ntTSL 219.44■□□□□ 0.72e-7■□□□□ 9.6
YBX3P16989 UTP4-209ENST00000567235 586 ntTSL 519.1■□□□□ 0.652e-7■□□□□ 9.6
YBX3P16989 THAP7-207ENST00000488975 507 ntTSL 519.05■□□□□ 0.648e-11■□□□□ 9.6
YBX3P16989 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.512e-7■□□□□ 9.6
YBX3P16989 WRB-214ENST00000623703 1392 ntTSL 217.95■□□□□ 0.463e-9■□□□□ 9.6
YBX3P16989 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC17.76■□□□□ 0.432e-7■□□□□ 9.6
YBX3P16989 TMEM248-203ENST00000418375 545 ntTSL 417.51■□□□□ 0.392e-9■□□□□ 9.6
YBX3P16989 RTL10-205ENST00000484072 1385 ntTSL 217.43■□□□□ 0.382e-7■□□□□ 9.6
YBX3P16989 RPP40-205ENST00000479782 500 ntTSL 516.99■□□□□ 0.312e-7■□□□□ 9.6
YBX3P16989 BFAR-202ENST00000562121 723 ntTSL 516.77■□□□□ 0.282e-7■□□□□ 9.6
YBX3P16989 WRB-202ENST00000380708 1464 ntTSL 1 (best) BASIC16.77■□□□□ 0.283e-9■□□□□ 9.6
YBX3P16989 BFAR-210ENST00000566520 1177 ntTSL 216.65■□□□□ 0.262e-7■□□□□ 9.6
YBX3P16989 BFAR-212ENST00000570219 722 ntTSL 315.97■□□□□ 0.152e-7■□□□□ 9.6
YBX3P16989 CLASP2-201ENST00000313350 1597 ntTSL 1 (best) BASIC15.62■□□□□ 0.092e-7■□□□□ 9.6
YBX3P16989 UTP4-208ENST00000567015 690 ntTSL 215.55■□□□□ 0.082e-7■□□□□ 9.6
YBX3P16989 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -02e-7■□□□□ 9.6
YBX3P16989 CLASP2-218ENST00000487200 1940 ntTSL 2 BASIC14.55□□□□□ -0.082e-7■□□□□ 9.6
YBX3P16989 DDI2-203ENST00000483899 497 ntTSL 313.85□□□□□ -0.192e-9■□□□□ 9.6
YBX3P16989 GNB1L-201ENST00000329517 6706 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.212e-7■□□□□ 9.6
YBX3P16989 FAM193A-201ENST00000324666 4846 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.222e-7■□□□□ 9.6
YBX3P16989 RINT1-201ENST00000257700 2976 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.222e-7■□□□□ 9.6
YBX3P16989 UTP4-216ENST00000569800 552 ntTSL 413.61□□□□□ -0.232e-7■□□□□ 9.6
YBX3P16989 NDUFS2-210ENST00000480762 951 ntTSL 513.53□□□□□ -0.242e-9■□□□□ 9.6
YBX3P16989 WRB-213ENST00000490860 624 ntTSL 213.51□□□□□ -0.253e-9■□□□□ 9.6
YBX3P16989 ZMPSTE24-201ENST00000372759 3108 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.272e-7■□□□□ 9.6
YBX3P16989 RTL10-202ENST00000405640 6785 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.32e-7■□□□□ 9.6
YBX3P16989 WRB-207ENST00000466787 1416 ntTSL 1 (best)13.14□□□□□ -0.313e-9■□□□□ 9.6
YBX3P16989 TMEM248-202ENST00000413593 637 ntTSL 413.08□□□□□ -0.322e-9■□□□□ 9.6
YBX3P16989 RTL10-201ENST00000328554 6619 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.352e-7■□□□□ 9.6
YBX3P16989 BFAR-206ENST00000563313 706 ntTSL 312.83□□□□□ -0.362e-7■□□□□ 9.6
YBX3P16989 WRB-205ENST00000415847 707 ntTSL 312.39□□□□□ -0.433e-9■□□□□ 9.6
YBX3P16989 RINT1-208ENST00000497979 2627 ntTSL 512.34□□□□□ -0.432e-7■□□□□ 9.6
YBX3P16989 KIF14-201ENST00000367350 7274 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.442e-7■□□□□ 9.6
YBX3P16989 FAM193A-207ENST00000512465 4663 ntTSL 1 (best)12.14□□□□□ -0.472e-7■□□□□ 9.6
YBX3P16989 BFAR-211ENST00000566710 1448 ntTSL 212.09□□□□□ -0.472e-7■□□□□ 9.6
YBX3P16989 OGFOD1-207ENST00000566157 4647 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.52e-6■□□□□ 9.6
YBX3P16989 FAM193A-202ENST00000382839 4710 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.512e-7■□□□□ 9.6
YBX3P16989 CLASP2-202ENST00000333778 1989 ntTSL 2 BASIC11.65□□□□□ -0.552e-7■□□□□ 9.6
YBX3P16989 AC005307.1-201ENST00000567877 1570 ntTSL 3 BASIC11.3□□□□□ -0.62e-7■□□□□ 9.6
YBX3P16989 FAM193A-208ENST00000513350 3727 ntAPPRIS ALT2 TSL 211.07□□□□□ -0.642e-7■□□□□ 9.6
YBX3P16989 EMC3-AS1-201ENST00000326237 2882 ntTSL 210.84□□□□□ -0.672e-7■□□□□ 9.6
YBX3P16989 RTL10-203ENST00000407472 6523 ntAPPRIS P2 TSL 1 (best) BASIC10.71□□□□□ -0.692e-7■□□□□ 9.6
YBX3P16989 BFAR-207ENST00000563971 1662 ntTSL 5 BASIC10.7□□□□□ -0.72e-7■□□□□ 9.6
YBX3P16989 UTP4-205ENST00000563299 581 ntTSL 310.62□□□□□ -0.712e-7■□□□□ 9.6
YBX3P16989 CD53-203ENST00000471220 657 ntTSL 210.26□□□□□ -0.772e-9■□□□□ 9.6
YBX3P16989 CTDSPL2-201ENST00000260327 6828 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.842e-9■□□□□ 9.6
YBX3P16989 MAN1A2-201ENST00000356554 8576 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.842e-7■□□□□ 9.6
YBX3P16989 BFAR-201ENST00000261658 3039 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.852e-7■□□□□ 9.6
YBX3P16989 CLASP2-216ENST00000485378 874 ntTSL 39.61□□□□□ -0.872e-7■□□□□ 9.6
YBX3P16989 FAM193A-210ENST00000545951 3987 ntAPPRIS ALT2 TSL 5 BASIC9.42□□□□□ -0.92e-7■□□□□ 9.6
YBX3P16989 FAM193A-204ENST00000505311 4110 ntAPPRIS ALT2 TSL 1 (best) BASIC9.25□□□□□ -0.932e-7■□□□□ 9.6
YBX3P16989 GNL2-207ENST00000489146 630 ntTSL 29.24□□□□□ -0.932e-7■□□□□ 9.6
YBX3P16989 FAM193A-209ENST00000513898 4202 ntTSL 1 (best)9.16□□□□□ -0.942e-7■□□□□ 9.6
YBX3P16989 FAM193A-203ENST00000502458 4083 ntAPPRIS ALT2 TSL 1 (best) BASIC9.05□□□□□ -0.962e-7■□□□□ 9.6
YBX3P16989 RINT1-203ENST00000474123 811 ntTSL 28.24□□□□□ -1.092e-7■□□□□ 9.6
YBX3P16989 FBXL4-202ENST00000369244 8035 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.132e-7■□□□□ 9.6
YBX3P16989 KIF14-202ENST00000614960 6838 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.242e-7■□□□□ 9.6
YBX3P16989 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.312e-7■□□□□ 9.6
YBX3P16989 CTDSPL2-206ENST00000559175 3609 ntTSL 25.92□□□□□ -1.462e-9■□□□□ 9.6
YBX3P16989 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC2.04□□□□□ -2.082e-9■□□□□ 9.6
YBX3P16989 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.031e-8■□□□□ 9.6
YBX3P16989 THEM6-203ENST00000520217 551 ntTSL 317.59■□□□□ 0.411e-8■□□□□ 9.6
YBX3P16989 THEM6-202ENST00000518798 2279 ntTSL 217.07■□□□□ 0.321e-8■□□□□ 9.6
YBX3P16989 ETFA-220ENST00000565910 609 ntTSL 36.19□□□□□ -1.426e-11■□□□□ 9.6
YBX3P16989 PKP4-211ENST00000481115 884 ntTSL 57.39□□□□□ -1.233e-7■□□□□ 9.6
YBX3P16989 SORL1-208ENST00000529445 616 ntTSL 216.31■□□□□ 0.28e-6■□□□□ 9.6
YBX3P16989 LOX-204ENST00000508067 561 ntTSL 45.23□□□□□ -1.578e-6■□□□□ 9.6
YBX3P16989 RPLP1-204ENST00000488122 940 ntTSL 227.1■■□□□ 1.937e-13■□□□□ 9.6
YBX3P16989 FKBP8-205ENST00000596494 439 ntTSL 323.09■■□□□ 1.293e-11■□□□□ 9.6
YBX3P16989 FKBP8-208ENST00000597611 966 ntTSL 320.53■□□□□ 0.883e-11■□□□□ 9.6
YBX3P16989 LINC01287-203ENST00000454441 1007 ntTSL 5 BASIC16■□□□□ 0.151e-11■□□□□ 9.6
YBX3P16989 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC27.37■■□□□ 1.972e-7■□□□□ 9.6
YBX3P16989 WIPI2-206ENST00000466014 1700 ntTSL 1 (best)27.19■■□□□ 1.942e-7■□□□□ 9.6
YBX3P16989 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC26.86■■□□□ 1.892e-7■□□□□ 9.6
YBX3P16989 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC22.39■■□□□ 1.172e-7■□□□□ 9.6
YBX3P16989 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.082e-7■□□□□ 9.6
YBX3P16989 ATF7IP-210ENST00000537653 3563 ntTSL 214.64□□□□□ -0.073e-6■□□□□ 9.6
YBX3P16989 ATF7IP-213ENST00000539659 2298 ntTSL 213.48□□□□□ -0.253e-6■□□□□ 9.6
YBX3P16989 ATF7IP-216ENST00000541654 2688 ntTSL 27.95□□□□□ -1.143e-6■□□□□ 9.6
Retrieved 100 of 29,075 protein–RNA pairs in 183 ms