Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
HMGB1P09429 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HMGB1P09429 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
HMGB1P09429 SERF2-209ENST00000409646 559 ntTSL 4 BASIC17.81■□□□□ 0.44
HMGB1P09429 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC17.81■□□□□ 0.44
HMGB1P09429 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
HMGB1P09429 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
HMGB1P09429 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC17.81■□□□□ 0.44
HMGB1P09429 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC17.81■□□□□ 0.44
HMGB1P09429 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC17.81■□□□□ 0.44
HMGB1P09429 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HMGB1P09429 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC17.81■□□□□ 0.44
HMGB1P09429 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC17.81■□□□□ 0.44
HMGB1P09429 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HMGB1P09429 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HMGB1P09429 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC17.81■□□□□ 0.44
HMGB1P09429 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HMGB1P09429 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HMGB1P09429 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
HMGB1P09429 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGB1P09429 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGB1P09429 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGB1P09429 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HMGB1P09429 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGB1P09429 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
HMGB1P09429 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGB1P09429 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HMGB1P09429 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
HMGB1P09429 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC17.8■□□□□ 0.44
HMGB1P09429 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
HMGB1P09429 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
HMGB1P09429 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGB1P09429 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC17.8■□□□□ 0.44
HMGB1P09429 AC011495.1-201ENST00000498085 584 ntBASIC17.8■□□□□ 0.44
HMGB1P09429 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC17.8■□□□□ 0.44
HMGB1P09429 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
HMGB1P09429 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HMGB1P09429 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
HMGB1P09429 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HMGB1P09429 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
HMGB1P09429 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGB1P09429 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGB1P09429 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HMGB1P09429 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGB1P09429 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
HMGB1P09429 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HMGB1P09429 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC17.8■□□□□ 0.44
HMGB1P09429 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC17.8■□□□□ 0.44
HMGB1P09429 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
HMGB1P09429 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HMGB1P09429 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
HMGB1P09429 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGB1P09429 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGB1P09429 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC17.79■□□□□ 0.44
HMGB1P09429 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGB1P09429 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
HMGB1P09429 AC134312.5-201ENST00000568031 1313 ntBASIC17.79■□□□□ 0.44
HMGB1P09429 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC17.79■□□□□ 0.44
HMGB1P09429 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGB1P09429 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC17.79■□□□□ 0.44
HMGB1P09429 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGB1P09429 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC17.79■□□□□ 0.44
HMGB1P09429 AC007969.1-201ENST00000433675 447 ntBASIC17.79■□□□□ 0.44
HMGB1P09429 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGB1P09429 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC17.79■□□□□ 0.44
HMGB1P09429 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC17.79■□□□□ 0.44
HMGB1P09429 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
HMGB1P09429 MIR5189-201ENST00000577370 114 ntBASIC17.79■□□□□ 0.44
HMGB1P09429 AC010319.3-201ENST00000597028 470 ntBASIC17.79■□□□□ 0.44
HMGB1P09429 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
HMGB1P09429 AC025048.6-201ENST00000634326 1161 ntBASIC17.79■□□□□ 0.44
HMGB1P09429 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
HMGB1P09429 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
HMGB1P09429 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGB1P09429 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGB1P09429 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGB1P09429 API5-203ENST00000455725 2257 ntTSL 2 BASIC17.79■□□□□ 0.44
HMGB1P09429 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
HMGB1P09429 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
HMGB1P09429 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
HMGB1P09429 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGB1P09429 AC007686.3-201ENST00000619017 3487 ntBASIC17.78■□□□□ 0.44
HMGB1P09429 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC17.78■□□□□ 0.44
HMGB1P09429 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC17.78■□□□□ 0.44
HMGB1P09429 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGB1P09429 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
HMGB1P09429 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC17.78■□□□□ 0.44
HMGB1P09429 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGB1P09429 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HMGB1P09429 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
HMGB1P09429 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGB1P09429 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC17.78■□□□□ 0.44
HMGB1P09429 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC17.78■□□□□ 0.44
HMGB1P09429 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC17.78■□□□□ 0.44
HMGB1P09429 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC17.78■□□□□ 0.44
HMGB1P09429 AC068587.3-201ENST00000526613 355 ntBASIC17.78■□□□□ 0.44
HMGB1P09429 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC17.78■□□□□ 0.44
HMGB1P09429 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HMGB1P09429 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGB1P09429 RPSAP52-203ENST00000622976 1023 ntBASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms