Protein–RNA interactions for Protein: O43353

RIPK2, Receptor-interacting serine/threonine-protein kinase 2, humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK2O43353 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC15.37■□□□□ 0.05
RIPK2O43353 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC15.37■□□□□ 0.05
RIPK2O43353 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC15.37■□□□□ 0.05
RIPK2O43353 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC15.37■□□□□ 0.05
RIPK2O43353 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC15.37■□□□□ 0.05
RIPK2O43353 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC15.37■□□□□ 0.05
RIPK2O43353 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC15.37■□□□□ 0.05
RIPK2O43353 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC15.37■□□□□ 0.05
RIPK2O43353 AC120114.3-201ENST00000611923 658 ntBASIC15.37■□□□□ 0.05
RIPK2O43353 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
RIPK2O43353 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
RIPK2O43353 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
RIPK2O43353 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
RIPK2O43353 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
RIPK2O43353 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
RIPK2O43353 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
RIPK2O43353 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
RIPK2O43353 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
RIPK2O43353 CICP8-201ENST00000455800 2813 ntBASIC15.37■□□□□ 0.05
RIPK2O43353 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
RIPK2O43353 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
RIPK2O43353 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
RIPK2O43353 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
RIPK2O43353 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
RIPK2O43353 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
RIPK2O43353 ELL2P1-201ENST00000413990 1906 ntBASIC15.37■□□□□ 0.05
RIPK2O43353 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC15.37■□□□□ 0.05
RIPK2O43353 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
RIPK2O43353 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC15.37■□□□□ 0.05
RIPK2O43353 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC15.36■□□□□ 0.05
RIPK2O43353 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
RIPK2O43353 CETN4P-206ENST00000642099 2168 ntBASIC15.36■□□□□ 0.05
RIPK2O43353 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
RIPK2O43353 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
RIPK2O43353 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
RIPK2O43353 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC15.36■□□□□ 0.05
RIPK2O43353 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC15.36■□□□□ 0.05
RIPK2O43353 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
RIPK2O43353 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
RIPK2O43353 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
RIPK2O43353 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC15.36■□□□□ 0.05
RIPK2O43353 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
RIPK2O43353 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
RIPK2O43353 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
RIPK2O43353 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
RIPK2O43353 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC15.36■□□□□ 0.05
RIPK2O43353 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC15.36■□□□□ 0.05
RIPK2O43353 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
RIPK2O43353 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
RIPK2O43353 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
RIPK2O43353 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC15.36■□□□□ 0.05
RIPK2O43353 AC004832.2-201ENST00000426397 482 ntBASIC15.36■□□□□ 0.05
RIPK2O43353 TPM4P1-201ENST00000436100 807 ntBASIC15.36■□□□□ 0.05
RIPK2O43353 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC15.36■□□□□ 0.05
RIPK2O43353 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC15.36■□□□□ 0.05
RIPK2O43353 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC15.36■□□□□ 0.05
RIPK2O43353 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC15.36■□□□□ 0.05
RIPK2O43353 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
RIPK2O43353 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC15.36■□□□□ 0.05
RIPK2O43353 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC15.36■□□□□ 0.05
RIPK2O43353 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC15.36■□□□□ 0.05
RIPK2O43353 AL513210.1-201ENST00000629608 234 ntBASIC15.36■□□□□ 0.05
RIPK2O43353 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC15.36■□□□□ 0.05
RIPK2O43353 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
RIPK2O43353 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
RIPK2O43353 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC15.36■□□□□ 0.05
RIPK2O43353 CICP16-201ENST00000502609 2813 ntBASIC15.36■□□□□ 0.05
RIPK2O43353 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
RIPK2O43353 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC15.36■□□□□ 0.05
RIPK2O43353 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
RIPK2O43353 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
RIPK2O43353 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
RIPK2O43353 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC15.36■□□□□ 0.05
RIPK2O43353 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
RIPK2O43353 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
RIPK2O43353 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC15.36■□□□□ 0.05
RIPK2O43353 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
RIPK2O43353 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
RIPK2O43353 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC15.35■□□□□ 0.05
RIPK2O43353 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
RIPK2O43353 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
RIPK2O43353 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC15.35■□□□□ 0.05
RIPK2O43353 CICP20-201ENST00000443330 2801 ntBASIC15.35■□□□□ 0.05
RIPK2O43353 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RIPK2O43353 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC15.35■□□□□ 0.05
RIPK2O43353 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC15.35■□□□□ 0.05
RIPK2O43353 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC15.35■□□□□ 0.05
RIPK2O43353 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
RIPK2O43353 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RIPK2O43353 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
RIPK2O43353 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC15.35■□□□□ 0.05
RIPK2O43353 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RIPK2O43353 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
RIPK2O43353 ANO9-201ENST00000332826 2542 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RIPK2O43353 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RIPK2O43353 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
RIPK2O43353 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RIPK2O43353 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
RIPK2O43353 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RIPK2O43353 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms