Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HIF3AQ9Y2N7 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC20.71■□□□□ 0.91
HIF3AQ9Y2N7 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HIF3AQ9Y2N7 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HIF3AQ9Y2N7 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HIF3AQ9Y2N7 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
HIF3AQ9Y2N7 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HIF3AQ9Y2N7 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HIF3AQ9Y2N7 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
HIF3AQ9Y2N7 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC20.71■□□□□ 0.91
HIF3AQ9Y2N7 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.91
HIF3AQ9Y2N7 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
HIF3AQ9Y2N7 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HIF3AQ9Y2N7 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HIF3AQ9Y2N7 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
HIF3AQ9Y2N7 AC004987.1-201ENST00000428627 508 ntBASIC20.7■□□□□ 0.9
HIF3AQ9Y2N7 ATP5G2P3-201ENST00000429083 425 ntBASIC20.7■□□□□ 0.9
HIF3AQ9Y2N7 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
HIF3AQ9Y2N7 LTK-203ENST00000453182 2412 ntTSL 2 BASIC20.7■□□□□ 0.9
HIF3AQ9Y2N7 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC20.7■□□□□ 0.9
HIF3AQ9Y2N7 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC20.7■□□□□ 0.9
HIF3AQ9Y2N7 CASK-201ENST00000378154 2494 ntTSL 5 BASIC20.7■□□□□ 0.9
HIF3AQ9Y2N7 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
HIF3AQ9Y2N7 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
HIF3AQ9Y2N7 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC20.7■□□□□ 0.9
HIF3AQ9Y2N7 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HIF3AQ9Y2N7 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
HIF3AQ9Y2N7 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC20.69■□□□□ 0.9
HIF3AQ9Y2N7 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC20.69■□□□□ 0.9
HIF3AQ9Y2N7 IDNK-201ENST00000376417 511 ntTSL 5 BASIC20.69■□□□□ 0.9
HIF3AQ9Y2N7 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HIF3AQ9Y2N7 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HIF3AQ9Y2N7 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC20.69■□□□□ 0.9
HIF3AQ9Y2N7 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
HIF3AQ9Y2N7 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HIF3AQ9Y2N7 AC074183.2-201ENST00000623112 922 ntBASIC20.69■□□□□ 0.9
HIF3AQ9Y2N7 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
HIF3AQ9Y2N7 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HIF3AQ9Y2N7 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
HIF3AQ9Y2N7 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
HIF3AQ9Y2N7 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
HIF3AQ9Y2N7 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HIF3AQ9Y2N7 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HIF3AQ9Y2N7 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
HIF3AQ9Y2N7 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HIF3AQ9Y2N7 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC20.68■□□□□ 0.9
HIF3AQ9Y2N7 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HIF3AQ9Y2N7 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
HIF3AQ9Y2N7 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HIF3AQ9Y2N7 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
HIF3AQ9Y2N7 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HIF3AQ9Y2N7 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC20.68■□□□□ 0.9
HIF3AQ9Y2N7 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
HIF3AQ9Y2N7 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HIF3AQ9Y2N7 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
HIF3AQ9Y2N7 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC20.68■□□□□ 0.9
HIF3AQ9Y2N7 AL022069.1-201ENST00000568025 1636 ntBASIC20.67■□□□□ 0.9
HIF3AQ9Y2N7 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HIF3AQ9Y2N7 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
HIF3AQ9Y2N7 DUSP8P5-201ENST00000422884 1815 ntBASIC20.67■□□□□ 0.9
HIF3AQ9Y2N7 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HIF3AQ9Y2N7 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC20.67■□□□□ 0.9
HIF3AQ9Y2N7 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC20.67■□□□□ 0.9
HIF3AQ9Y2N7 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC20.67■□□□□ 0.9
HIF3AQ9Y2N7 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HIF3AQ9Y2N7 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
HIF3AQ9Y2N7 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC20.66■□□□□ 0.9
HIF3AQ9Y2N7 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HIF3AQ9Y2N7 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC20.66■□□□□ 0.9
HIF3AQ9Y2N7 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC20.66■□□□□ 0.9
HIF3AQ9Y2N7 BHLHE23-202ENST00000612929 1109 ntBASIC20.66■□□□□ 0.9
HIF3AQ9Y2N7 GAK-223ENST00000628912 497 ntTSL 5 BASIC20.66■□□□□ 0.9
HIF3AQ9Y2N7 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HIF3AQ9Y2N7 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HIF3AQ9Y2N7 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HIF3AQ9Y2N7 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
HIF3AQ9Y2N7 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC20.65■□□□□ 0.9
HIF3AQ9Y2N7 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC20.65■□□□□ 0.9
HIF3AQ9Y2N7 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC20.65■□□□□ 0.9
HIF3AQ9Y2N7 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC20.65■□□□□ 0.9
HIF3AQ9Y2N7 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HIF3AQ9Y2N7 TSPY13P-201ENST00000338964 914 ntBASIC20.65■□□□□ 0.9
HIF3AQ9Y2N7 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC20.65■□□□□ 0.9
HIF3AQ9Y2N7 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC20.65■□□□□ 0.9
HIF3AQ9Y2N7 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC20.65■□□□□ 0.9
HIF3AQ9Y2N7 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HIF3AQ9Y2N7 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC20.65■□□□□ 0.9
HIF3AQ9Y2N7 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HIF3AQ9Y2N7 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HIF3AQ9Y2N7 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
HIF3AQ9Y2N7 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
HIF3AQ9Y2N7 EI24-213ENST00000618552 1747 ntTSL 5 BASIC20.64■□□□□ 0.9
HIF3AQ9Y2N7 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
HIF3AQ9Y2N7 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.9
HIF3AQ9Y2N7 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC20.64■□□□□ 0.89
HIF3AQ9Y2N7 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
HIF3AQ9Y2N7 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC20.64■□□□□ 0.89
HIF3AQ9Y2N7 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HIF3AQ9Y2N7 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC20.64■□□□□ 0.89
HIF3AQ9Y2N7 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 78.9 ms