Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
NKX3-1Q99801 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
NKX3-1Q99801 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC19.95■□□□□ 0.78
NKX3-1Q99801 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
NKX3-1Q99801 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
NKX3-1Q99801 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
NKX3-1Q99801 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
NKX3-1Q99801 GFER-205ENST00000569451 517 ntTSL 5 BASIC19.94■□□□□ 0.78
NKX3-1Q99801 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
NKX3-1Q99801 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
NKX3-1Q99801 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
NKX3-1Q99801 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
NKX3-1Q99801 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
NKX3-1Q99801 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
NKX3-1Q99801 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC19.93■□□□□ 0.78
NKX3-1Q99801 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
NKX3-1Q99801 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
NKX3-1Q99801 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
NKX3-1Q99801 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC19.93■□□□□ 0.78
NKX3-1Q99801 GALC-202ENST00000393568 2054 ntTSL 2 BASIC19.93■□□□□ 0.78
NKX3-1Q99801 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
NKX3-1Q99801 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
NKX3-1Q99801 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NKX3-1Q99801 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
NKX3-1Q99801 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
NKX3-1Q99801 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
NKX3-1Q99801 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NKX3-1Q99801 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NKX3-1Q99801 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
NKX3-1Q99801 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
NKX3-1Q99801 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
NKX3-1Q99801 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
NKX3-1Q99801 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
NKX3-1Q99801 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC19.91■□□□□ 0.78
NKX3-1Q99801 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
NKX3-1Q99801 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC19.91■□□□□ 0.78
NKX3-1Q99801 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
NKX3-1Q99801 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
NKX3-1Q99801 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
NKX3-1Q99801 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC19.91■□□□□ 0.78
NKX3-1Q99801 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
NKX3-1Q99801 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
NKX3-1Q99801 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
NKX3-1Q99801 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
NKX3-1Q99801 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
NKX3-1Q99801 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
NKX3-1Q99801 AC133552.2-201ENST00000619106 1032 ntBASIC19.9■□□□□ 0.78
NKX3-1Q99801 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
NKX3-1Q99801 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
NKX3-1Q99801 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC19.9■□□□□ 0.78
NKX3-1Q99801 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
NKX3-1Q99801 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC19.9■□□□□ 0.78
NKX3-1Q99801 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC19.9■□□□□ 0.78
NKX3-1Q99801 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
NKX3-1Q99801 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
NKX3-1Q99801 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
NKX3-1Q99801 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
NKX3-1Q99801 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
NKX3-1Q99801 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
NKX3-1Q99801 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC19.89■□□□□ 0.77
NKX3-1Q99801 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
NKX3-1Q99801 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
NKX3-1Q99801 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC19.88■□□□□ 0.77
NKX3-1Q99801 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
NKX3-1Q99801 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
NKX3-1Q99801 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
NKX3-1Q99801 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
NKX3-1Q99801 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
NKX3-1Q99801 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NKX3-1Q99801 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NKX3-1Q99801 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
NKX3-1Q99801 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
NKX3-1Q99801 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
NKX3-1Q99801 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
NKX3-1Q99801 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
NKX3-1Q99801 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
NKX3-1Q99801 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC19.87■□□□□ 0.77
NKX3-1Q99801 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
NKX3-1Q99801 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
NKX3-1Q99801 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
NKX3-1Q99801 SPCS2P3-201ENST00000500401 656 ntBASIC19.87■□□□□ 0.77
NKX3-1Q99801 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC19.87■□□□□ 0.77
NKX3-1Q99801 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC19.87■□□□□ 0.77
NKX3-1Q99801 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
NKX3-1Q99801 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
NKX3-1Q99801 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
NKX3-1Q99801 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
NKX3-1Q99801 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NKX3-1Q99801 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NKX3-1Q99801 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NKX3-1Q99801 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
NKX3-1Q99801 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
NKX3-1Q99801 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NKX3-1Q99801 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NKX3-1Q99801 HES4-204ENST00000484667 667 ntTSL 3 BASIC19.86■□□□□ 0.77
NKX3-1Q99801 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NKX3-1Q99801 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC19.86■□□□□ 0.77
NKX3-1Q99801 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
NKX3-1Q99801 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
NKX3-1Q99801 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 12.8 ms