Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC27.72■■■□□ 2.03
SMC1BQ8NDV3 CCDC92B-201ENST00000575506 885 ntBASIC27.72■■■□□ 2.03
SMC1BQ8NDV3 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC27.72■■■□□ 2.03
SMC1BQ8NDV3 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
SMC1BQ8NDV3 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
SMC1BQ8NDV3 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC27.71■■■□□ 2.03
SMC1BQ8NDV3 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
SMC1BQ8NDV3 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC27.71■■■□□ 2.03
SMC1BQ8NDV3 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC27.71■■■□□ 2.03
SMC1BQ8NDV3 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC27.71■■■□□ 2.03
SMC1BQ8NDV3 AC126544.1-201ENST00000580842 1059 ntBASIC27.71■■■□□ 2.03
SMC1BQ8NDV3 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC27.71■■■□□ 2.03
SMC1BQ8NDV3 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC27.71■■■□□ 2.03
SMC1BQ8NDV3 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
SMC1BQ8NDV3 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
SMC1BQ8NDV3 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC27.71■■■□□ 2.03
SMC1BQ8NDV3 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.02
SMC1BQ8NDV3 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC27.7■■■□□ 2.02
SMC1BQ8NDV3 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC27.7■■■□□ 2.02
SMC1BQ8NDV3 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC27.7■■■□□ 2.02
SMC1BQ8NDV3 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC27.7■■■□□ 2.02
SMC1BQ8NDV3 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC27.69■■■□□ 2.02
SMC1BQ8NDV3 AC104771.1-201ENST00000603335 964 ntBASIC27.69■■■□□ 2.02
SMC1BQ8NDV3 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC27.68■■■□□ 2.02
SMC1BQ8NDV3 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC27.68■■■□□ 2.02
SMC1BQ8NDV3 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
SMC1BQ8NDV3 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC27.68■■■□□ 2.02
SMC1BQ8NDV3 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC27.68■■■□□ 2.02
SMC1BQ8NDV3 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC27.68■■■□□ 2.02
SMC1BQ8NDV3 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC27.68■■■□□ 2.02
SMC1BQ8NDV3 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC27.68■■■□□ 2.02
SMC1BQ8NDV3 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC27.68■■■□□ 2.02
SMC1BQ8NDV3 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
SMC1BQ8NDV3 TSPY26P-201ENST00000476365 1326 ntBASIC27.67■■■□□ 2.02
SMC1BQ8NDV3 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC27.67■■■□□ 2.02
SMC1BQ8NDV3 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC27.67■■■□□ 2.02
SMC1BQ8NDV3 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC27.67■■■□□ 2.02
SMC1BQ8NDV3 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
SMC1BQ8NDV3 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC27.66■■■□□ 2.02
SMC1BQ8NDV3 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
SMC1BQ8NDV3 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
SMC1BQ8NDV3 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC27.66■■■□□ 2.02
SMC1BQ8NDV3 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC27.66■■■□□ 2.02
SMC1BQ8NDV3 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC27.66■■■□□ 2.02
SMC1BQ8NDV3 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC27.66■■■□□ 2.02
SMC1BQ8NDV3 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC27.66■■■□□ 2.02
SMC1BQ8NDV3 AC241377.3-202ENST00000626088 1088 ntBASIC27.66■■■□□ 2.02
SMC1BQ8NDV3 AC241585.3-202ENST00000628937 1088 ntBASIC27.66■■■□□ 2.02
SMC1BQ8NDV3 RAP2CP1-201ENST00000605103 478 ntBASIC27.65■■■□□ 2.02
SMC1BQ8NDV3 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
SMC1BQ8NDV3 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
SMC1BQ8NDV3 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
SMC1BQ8NDV3 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC27.64■■■□□ 2.02
SMC1BQ8NDV3 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC27.64■■■□□ 2.02
SMC1BQ8NDV3 AC142472.1-201ENST00000612013 1741 ntBASIC27.64■■■□□ 2.02
SMC1BQ8NDV3 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC27.64■■■□□ 2.02
SMC1BQ8NDV3 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.02
SMC1BQ8NDV3 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC27.64■■■□□ 2.02
SMC1BQ8NDV3 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.02
SMC1BQ8NDV3 SNX3-202ENST00000349379 890 ntTSL 2 BASIC27.64■■■□□ 2.02
SMC1BQ8NDV3 KRT18P14-201ENST00000534205 1250 ntBASIC27.64■■■□□ 2.02
SMC1BQ8NDV3 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC27.64■■■□□ 2.02
SMC1BQ8NDV3 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC27.64■■■□□ 2.02
SMC1BQ8NDV3 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC27.64■■■□□ 2.01
SMC1BQ8NDV3 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC27.63■■■□□ 2.01
SMC1BQ8NDV3 MIR6084-201ENST00000622012 110 ntBASIC27.63■■■□□ 2.01
SMC1BQ8NDV3 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC27.63■■■□□ 2.01
SMC1BQ8NDV3 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC27.63■■■□□ 2.01
SMC1BQ8NDV3 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
SMC1BQ8NDV3 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
SMC1BQ8NDV3 REST-206ENST00000612429 1376 ntTSL 5 BASIC27.62■■■□□ 2.01
SMC1BQ8NDV3 REST-207ENST00000616975 1370 ntTSL 5 BASIC27.62■■■□□ 2.01
SMC1BQ8NDV3 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC27.62■■■□□ 2.01
SMC1BQ8NDV3 AL355802.2-201ENST00000402069 882 ntBASIC27.62■■■□□ 2.01
SMC1BQ8NDV3 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC27.62■■■□□ 2.01
SMC1BQ8NDV3 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
SMC1BQ8NDV3 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC27.62■■■□□ 2.01
SMC1BQ8NDV3 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC27.62■■■□□ 2.01
SMC1BQ8NDV3 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC27.61■■■□□ 2.01
SMC1BQ8NDV3 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
SMC1BQ8NDV3 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC27.6■■■□□ 2.01
SMC1BQ8NDV3 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC27.6■■■□□ 2.01
SMC1BQ8NDV3 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC27.59■■■□□ 2.01
SMC1BQ8NDV3 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC27.59■■■□□ 2.01
SMC1BQ8NDV3 CDCA4P2-201ENST00000441182 718 ntBASIC27.59■■■□□ 2.01
SMC1BQ8NDV3 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC27.59■■■□□ 2.01
SMC1BQ8NDV3 AICDA-202ENST00000537228 667 ntTSL 5 BASIC27.59■■■□□ 2.01
SMC1BQ8NDV3 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC27.59■■■□□ 2.01
SMC1BQ8NDV3 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC27.58■■■□□ 2.01
SMC1BQ8NDV3 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC27.58■■■□□ 2.01
SMC1BQ8NDV3 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC27.58■■■□□ 2.01
SMC1BQ8NDV3 AC012414.1-201ENST00000556676 535 ntBASIC27.58■■■□□ 2.01
SMC1BQ8NDV3 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC27.58■■■□□ 2.01
SMC1BQ8NDV3 AL354811.1-201ENST00000610286 706 ntBASIC27.58■■■□□ 2.01
SMC1BQ8NDV3 AC073111.5-205ENST00000641717 521 ntBASIC27.58■■■□□ 2.01
SMC1BQ8NDV3 AC009102.2-201ENST00000606772 1639 ntBASIC27.58■■■□□ 2.01
SMC1BQ8NDV3 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
SMC1BQ8NDV3 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2
SMC1BQ8NDV3 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
SMC1BQ8NDV3 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC27.57■■■□□ 2
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms