Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
TPM1P09493 CEP120-209ENST00000515110 606 ntTSL 3 BASIC25.18■■□□□ 1.62
TPM1P09493 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC25.17■■□□□ 1.62
TPM1P09493 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
TPM1P09493 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
TPM1P09493 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC25.17■■□□□ 1.62
TPM1P09493 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC25.17■■□□□ 1.62
TPM1P09493 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
TPM1P09493 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
TPM1P09493 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
TPM1P09493 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
TPM1P09493 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC25.17■■□□□ 1.62
TPM1P09493 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
TPM1P09493 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
TPM1P09493 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC25.16■■□□□ 1.62
TPM1P09493 RAP2CP1-202ENST00000605179 643 ntBASIC25.16■■□□□ 1.62
TPM1P09493 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC25.16■■□□□ 1.62
TPM1P09493 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
TPM1P09493 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC25.15■■□□□ 1.62
TPM1P09493 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC25.15■■□□□ 1.62
TPM1P09493 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC25.15■■□□□ 1.62
TPM1P09493 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC25.15■■□□□ 1.62
TPM1P09493 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC25.15■■□□□ 1.62
TPM1P09493 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC25.15■■□□□ 1.62
TPM1P09493 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC25.15■■□□□ 1.62
TPM1P09493 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC25.15■■□□□ 1.62
TPM1P09493 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC25.15■■□□□ 1.62
TPM1P09493 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC25.15■■□□□ 1.62
TPM1P09493 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC25.15■■□□□ 1.62
TPM1P09493 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
TPM1P09493 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC25.14■■□□□ 1.62
TPM1P09493 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
TPM1P09493 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
TPM1P09493 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
TPM1P09493 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC25.14■■□□□ 1.62
TPM1P09493 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC25.14■■□□□ 1.62
TPM1P09493 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC25.14■■□□□ 1.61
TPM1P09493 C9orf163-202ENST00000624034 2573 ntBASIC25.14■■□□□ 1.61
TPM1P09493 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC25.14■■□□□ 1.61
TPM1P09493 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC25.14■■□□□ 1.61
TPM1P09493 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
TPM1P09493 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC25.13■■□□□ 1.61
TPM1P09493 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
TPM1P09493 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
TPM1P09493 MIR639-201ENST00000384974 98 ntBASIC25.13■■□□□ 1.61
TPM1P09493 SRP68-213ENST00000629930 165 ntTSL 5 BASIC25.13■■□□□ 1.61
TPM1P09493 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC25.13■■□□□ 1.61
TPM1P09493 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
TPM1P09493 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
TPM1P09493 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
TPM1P09493 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC25.12■■□□□ 1.61
TPM1P09493 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
TPM1P09493 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC25.12■■□□□ 1.61
TPM1P09493 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC25.12■■□□□ 1.61
TPM1P09493 HES4-202ENST00000428771 1040 ntTSL 2 BASIC25.12■■□□□ 1.61
TPM1P09493 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC25.12■■□□□ 1.61
TPM1P09493 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC25.12■■□□□ 1.61
TPM1P09493 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
TPM1P09493 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
TPM1P09493 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC25.12■■□□□ 1.61
TPM1P09493 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC25.12■■□□□ 1.61
TPM1P09493 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
TPM1P09493 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC25.12■■□□□ 1.61
TPM1P09493 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
TPM1P09493 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
TPM1P09493 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC25.11■■□□□ 1.61
TPM1P09493 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC25.11■■□□□ 1.61
TPM1P09493 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC25.11■■□□□ 1.61
TPM1P09493 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC25.11■■□□□ 1.61
TPM1P09493 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC25.11■■□□□ 1.61
TPM1P09493 AC026202.3-201ENST00000600805 1127 ntBASIC25.11■■□□□ 1.61
TPM1P09493 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
TPM1P09493 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC25.1■■□□□ 1.61
TPM1P09493 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC25.1■■□□□ 1.61
TPM1P09493 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC25.1■■□□□ 1.61
TPM1P09493 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
TPM1P09493 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
TPM1P09493 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
TPM1P09493 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
TPM1P09493 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC25.1■■□□□ 1.61
TPM1P09493 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
TPM1P09493 MIR7108-201ENST00000614319 87 ntBASIC25.1■■□□□ 1.61
TPM1P09493 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
TPM1P09493 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
TPM1P09493 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
TPM1P09493 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC25.1■■□□□ 1.61
TPM1P09493 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC25.1■■□□□ 1.61
TPM1P09493 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC25.1■■□□□ 1.61
TPM1P09493 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
TPM1P09493 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
TPM1P09493 AL117328.2-201ENST00000624617 1940 ntBASIC25.1■■□□□ 1.61
TPM1P09493 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
TPM1P09493 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
TPM1P09493 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC25.09■■□□□ 1.61
TPM1P09493 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
TPM1P09493 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC25.09■■□□□ 1.61
TPM1P09493 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
TPM1P09493 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
TPM1P09493 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
TPM1P09493 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC25.09■■□□□ 1.61
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms