Protein–RNA interactions for Protein: Q9H9A6

LRRC40, Leucine-rich repeat-containing protein 40, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC40Q9H9A6 AC008761.3-201ENST00000624803 892 ntBASIC15.39■□□□□ 0.05
LRRC40Q9H9A6 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC15.39■□□□□ 0.05
LRRC40Q9H9A6 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
LRRC40Q9H9A6 KRT8P14-201ENST00000414254 1442 ntBASIC15.39■□□□□ 0.05
LRRC40Q9H9A6 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC15.39■□□□□ 0.05
LRRC40Q9H9A6 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
LRRC40Q9H9A6 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC15.39■□□□□ 0.05
LRRC40Q9H9A6 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LRRC40Q9H9A6 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC15.39■□□□□ 0.05
LRRC40Q9H9A6 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
LRRC40Q9H9A6 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
LRRC40Q9H9A6 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LRRC40Q9H9A6 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LRRC40Q9H9A6 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LRRC40Q9H9A6 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LRRC40Q9H9A6 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
LRRC40Q9H9A6 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC15.38■□□□□ 0.05
LRRC40Q9H9A6 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC15.38■□□□□ 0.05
LRRC40Q9H9A6 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC15.38■□□□□ 0.05
LRRC40Q9H9A6 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC15.38■□□□□ 0.05
LRRC40Q9H9A6 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
LRRC40Q9H9A6 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC15.38■□□□□ 0.05
LRRC40Q9H9A6 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC15.38■□□□□ 0.05
LRRC40Q9H9A6 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LRRC40Q9H9A6 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC15.38■□□□□ 0.05
LRRC40Q9H9A6 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
LRRC40Q9H9A6 TK2-221ENST00000620035 5060 ntTSL 2 BASIC15.38■□□□□ 0.05
LRRC40Q9H9A6 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LRRC40Q9H9A6 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
LRRC40Q9H9A6 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
LRRC40Q9H9A6 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC15.38■□□□□ 0.05
LRRC40Q9H9A6 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LRRC40Q9H9A6 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
LRRC40Q9H9A6 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC15.38■□□□□ 0.05
LRRC40Q9H9A6 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
LRRC40Q9H9A6 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
LRRC40Q9H9A6 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LRRC40Q9H9A6 AP001582.1-201ENST00000525856 295 ntBASIC15.38■□□□□ 0.05
LRRC40Q9H9A6 AL359711.2-201ENST00000563105 872 ntBASIC15.38■□□□□ 0.05
LRRC40Q9H9A6 IFT20-206ENST00000578122 834 ntTSL 2 BASIC15.38■□□□□ 0.05
LRRC40Q9H9A6 IFT20-208ENST00000578985 831 ntTSL 3 BASIC15.38■□□□□ 0.05
LRRC40Q9H9A6 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC15.38■□□□□ 0.05
LRRC40Q9H9A6 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
LRRC40Q9H9A6 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LRRC40Q9H9A6 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC15.38■□□□□ 0.05
LRRC40Q9H9A6 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
LRRC40Q9H9A6 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LRRC40Q9H9A6 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC15.38■□□□□ 0.05
LRRC40Q9H9A6 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC15.38■□□□□ 0.05
LRRC40Q9H9A6 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
LRRC40Q9H9A6 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
LRRC40Q9H9A6 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC15.38■□□□□ 0.05
LRRC40Q9H9A6 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC15.38■□□□□ 0.05
LRRC40Q9H9A6 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LRRC40Q9H9A6 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
LRRC40Q9H9A6 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
LRRC40Q9H9A6 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 HNRNPA1P48-201ENST00000562726 1377 ntBASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 AC018665.1-201ENST00000622927 1362 ntBASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 SNX18-202ENST00000343017 3140 ntBASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 AC007326.2-201ENST00000624224 7579 ntBASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 AC098850.1-201ENST00000419919 790 ntBASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 MYCLP2-201ENST00000449268 967 ntBASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 AC133539.2-201ENST00000604757 467 ntBASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 AGER-206ENST00000375070 1463 ntTSL 5 BASIC15.37■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms