Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC17.79■□□□□ 0.44
NKX2-3Q8TAU0 HNRNPA1P48-202ENST00000565308 961 ntBASIC17.79■□□□□ 0.44
NKX2-3Q8TAU0 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC17.79■□□□□ 0.44
NKX2-3Q8TAU0 AC132938.4-201ENST00000623835 848 ntBASIC17.79■□□□□ 0.44
NKX2-3Q8TAU0 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
NKX2-3Q8TAU0 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
NKX2-3Q8TAU0 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
NKX2-3Q8TAU0 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
NKX2-3Q8TAU0 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
NKX2-3Q8TAU0 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
NKX2-3Q8TAU0 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
NKX2-3Q8TAU0 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
NKX2-3Q8TAU0 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
NKX2-3Q8TAU0 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
NKX2-3Q8TAU0 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
NKX2-3Q8TAU0 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC17.78■□□□□ 0.44
NKX2-3Q8TAU0 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
NKX2-3Q8TAU0 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
NKX2-3Q8TAU0 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
NKX2-3Q8TAU0 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
NKX2-3Q8TAU0 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
NKX2-3Q8TAU0 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
NKX2-3Q8TAU0 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
NKX2-3Q8TAU0 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC17.78■□□□□ 0.44
NKX2-3Q8TAU0 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
NKX2-3Q8TAU0 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
NKX2-3Q8TAU0 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
NKX2-3Q8TAU0 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
NKX2-3Q8TAU0 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
NKX2-3Q8TAU0 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
NKX2-3Q8TAU0 MTHFR-210ENST00000641407 2387 ntBASIC17.78■□□□□ 0.44
NKX2-3Q8TAU0 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
NKX2-3Q8TAU0 ATP5C1-201ENST00000335698 1078 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
NKX2-3Q8TAU0 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC17.78■□□□□ 0.44
NKX2-3Q8TAU0 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
NKX2-3Q8TAU0 HNRNPA1P32-201ENST00000396326 963 ntBASIC17.78■□□□□ 0.44
NKX2-3Q8TAU0 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
NKX2-3Q8TAU0 PTPA-218ENST00000435132 618 ntTSL 2 BASIC17.78■□□□□ 0.44
NKX2-3Q8TAU0 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC17.78■□□□□ 0.44
NKX2-3Q8TAU0 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
NKX2-3Q8TAU0 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC17.78■□□□□ 0.44
NKX2-3Q8TAU0 HIST2H2BC-201ENST00000498492 580 ntBASIC17.78■□□□□ 0.44
NKX2-3Q8TAU0 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC17.78■□□□□ 0.44
NKX2-3Q8TAU0 RNA5SP486-201ENST00000515961 83 ntBASIC17.78■□□□□ 0.44
NKX2-3Q8TAU0 AL589935.2-201ENST00000616471 1231 ntBASIC17.78■□□□□ 0.44
NKX2-3Q8TAU0 AC138951.2-201ENST00000623455 1161 ntBASIC17.78■□□□□ 0.44
NKX2-3Q8TAU0 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
NKX2-3Q8TAU0 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
NKX2-3Q8TAU0 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
NKX2-3Q8TAU0 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
NKX2-3Q8TAU0 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
NKX2-3Q8TAU0 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
NKX2-3Q8TAU0 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC17.78■□□□□ 0.44
NKX2-3Q8TAU0 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
NKX2-3Q8TAU0 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC17.78■□□□□ 0.44
NKX2-3Q8TAU0 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
NKX2-3Q8TAU0 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
NKX2-3Q8TAU0 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
NKX2-3Q8TAU0 AC011840.2-201ENST00000563063 1520 ntBASIC17.77■□□□□ 0.44
NKX2-3Q8TAU0 AC015818.8-201ENST00000587907 1519 ntBASIC17.77■□□□□ 0.44
NKX2-3Q8TAU0 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC17.77■□□□□ 0.44
NKX2-3Q8TAU0 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
NKX2-3Q8TAU0 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
NKX2-3Q8TAU0 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
NKX2-3Q8TAU0 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
NKX2-3Q8TAU0 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
NKX2-3Q8TAU0 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
NKX2-3Q8TAU0 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
NKX2-3Q8TAU0 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
NKX2-3Q8TAU0 MIR1202-201ENST00000408529 83 ntBASIC17.77■□□□□ 0.44
NKX2-3Q8TAU0 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC17.77■□□□□ 0.44
NKX2-3Q8TAU0 HOMER2P2-201ENST00000451621 847 ntBASIC17.77■□□□□ 0.44
NKX2-3Q8TAU0 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
NKX2-3Q8TAU0 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC17.77■□□□□ 0.44
NKX2-3Q8TAU0 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC17.77■□□□□ 0.44
NKX2-3Q8TAU0 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC17.77■□□□□ 0.44
NKX2-3Q8TAU0 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
NKX2-3Q8TAU0 AC106820.3-201ENST00000561653 397 ntBASIC17.77■□□□□ 0.44
NKX2-3Q8TAU0 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC17.77■□□□□ 0.44
NKX2-3Q8TAU0 RN7SL48P-201ENST00000579283 293 ntBASIC17.77■□□□□ 0.44
NKX2-3Q8TAU0 MIR4741-201ENST00000579822 90 ntBASIC17.77■□□□□ 0.44
NKX2-3Q8TAU0 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC17.77■□□□□ 0.44
NKX2-3Q8TAU0 EEF1DP1-201ENST00000585891 896 ntBASIC17.77■□□□□ 0.44
NKX2-3Q8TAU0 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
NKX2-3Q8TAU0 NDUFV2P1-201ENST00000596415 907 ntBASIC17.77■□□□□ 0.44
NKX2-3Q8TAU0 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC17.77■□□□□ 0.44
NKX2-3Q8TAU0 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC17.77■□□□□ 0.44
NKX2-3Q8TAU0 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC17.77■□□□□ 0.44
NKX2-3Q8TAU0 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC17.77■□□□□ 0.44
NKX2-3Q8TAU0 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
NKX2-3Q8TAU0 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
NKX2-3Q8TAU0 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
NKX2-3Q8TAU0 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC17.77■□□□□ 0.43
NKX2-3Q8TAU0 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
NKX2-3Q8TAU0 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC17.77■□□□□ 0.43
NKX2-3Q8TAU0 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC17.77■□□□□ 0.43
NKX2-3Q8TAU0 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
NKX2-3Q8TAU0 FES-203ENST00000394302 2133 ntTSL 5 BASIC17.77■□□□□ 0.43
NKX2-3Q8TAU0 API5-203ENST00000455725 2257 ntTSL 2 BASIC17.77■□□□□ 0.43
NKX2-3Q8TAU0 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms