Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC14.51□□□□□ -0.09
MSX2P35548 POMT1-201ENST00000341012 2912 ntTSL 2 BASIC14.51□□□□□ -0.09
MSX2P35548 MARK1-201ENST00000366917 2946 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
MSX2P35548 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC14.51□□□□□ -0.09
MSX2P35548 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
MSX2P35548 KRT74-203ENST00000549343 2858 ntTSL 5 BASIC14.51□□□□□ -0.09
MSX2P35548 ACSM2A-209ENST00000573854 2837 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
MSX2P35548 AL356585.2-201ENST00000625078 2396 ntBASIC14.51□□□□□ -0.09
MSX2P35548 ZBTB45P1-201ENST00000452761 1456 ntBASIC14.5□□□□□ -0.09
MSX2P35548 AC093668.2-201ENST00000481893 3569 ntTSL 2 BASIC14.5□□□□□ -0.09
MSX2P35548 AC105052.1-201ENST00000519541 3569 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
MSX2P35548 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
MSX2P35548 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
MSX2P35548 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
MSX2P35548 GTF2IRD1-202ENST00000424337 3077 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
MSX2P35548 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
MSX2P35548 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
MSX2P35548 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
MSX2P35548 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC14.5□□□□□ -0.09
MSX2P35548 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC14.5□□□□□ -0.09
MSX2P35548 PDE1C-205ENST00000396191 2952 ntAPPRIS ALT1 TSL 2 BASIC14.5□□□□□ -0.09
MSX2P35548 VPS52-212ENST00000445902 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
MSX2P35548 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
MSX2P35548 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
MSX2P35548 USP2-201ENST00000260187 3732 ntAPPRIS P4 TSL 1 (best) BASIC14.5□□□□□ -0.09
MSX2P35548 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC14.5□□□□□ -0.09
MSX2P35548 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC14.5□□□□□ -0.09
MSX2P35548 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
MSX2P35548 AC068888.1-207ENST00000546793 2863 ntTSL 2 BASIC14.5□□□□□ -0.09
MSX2P35548 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
MSX2P35548 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC14.5□□□□□ -0.09
MSX2P35548 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC14.5□□□□□ -0.09
MSX2P35548 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
MSX2P35548 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC14.5□□□□□ -0.09
MSX2P35548 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
MSX2P35548 RAPGEF3-218ENST00000548919 2776 ntTSL 2 BASIC14.5□□□□□ -0.09
MSX2P35548 AC004899.2-201ENST00000622993 3860 ntBASIC14.5□□□□□ -0.09
MSX2P35548 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
MSX2P35548 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
MSX2P35548 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
MSX2P35548 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
MSX2P35548 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
MSX2P35548 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
MSX2P35548 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
MSX2P35548 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
MSX2P35548 PTMS-202ENST00000389462 773 ntTSL 2 BASIC14.5□□□□□ -0.09
MSX2P35548 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC14.5□□□□□ -0.09
MSX2P35548 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC14.5□□□□□ -0.09
MSX2P35548 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC14.5□□□□□ -0.09
MSX2P35548 KRT8P48-201ENST00000515599 1220 ntBASIC14.5□□□□□ -0.09
MSX2P35548 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC14.5□□□□□ -0.09
MSX2P35548 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC14.5□□□□□ -0.09
MSX2P35548 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC14.5□□□□□ -0.09
MSX2P35548 RN7SL510P-201ENST00000581311 263 ntBASIC14.5□□□□□ -0.09
MSX2P35548 UBL5-208ENST00000593087 320 ntTSL 3 BASIC14.5□□□□□ -0.09
MSX2P35548 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC14.5□□□□□ -0.09
MSX2P35548 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC14.5□□□□□ -0.09
MSX2P35548 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
MSX2P35548 AL354702.1-201ENST00000442006 1960 ntBASIC14.5□□□□□ -0.09
MSX2P35548 CNTN1-203ENST00000547702 3033 ntTSL 2 BASIC14.5□□□□□ -0.09
MSX2P35548 AC011298.1-201ENST00000407635 3398 ntTSL 2 BASIC14.5□□□□□ -0.09
MSX2P35548 ADAMTS7P1-201ENST00000613213 4793 ntBASIC14.5□□□□□ -0.09
MSX2P35548 SLC23A1-201ENST00000348729 2299 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
MSX2P35548 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
MSX2P35548 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
MSX2P35548 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
MSX2P35548 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
MSX2P35548 AL359183.1-201ENST00000623796 2132 ntBASIC14.5□□□□□ -0.09
MSX2P35548 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
MSX2P35548 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC14.5□□□□□ -0.09
MSX2P35548 FFAR4-202ENST00000371483 3653 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
MSX2P35548 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
MSX2P35548 SPHK2-201ENST00000245222 2963 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
MSX2P35548 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC14.49□□□□□ -0.09
MSX2P35548 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
MSX2P35548 LDB3-209ENST00000623056 2314 ntTSL 5 BASIC14.49□□□□□ -0.09
MSX2P35548 LILRP1-201ENST00000444199 1370 ntBASIC14.49□□□□□ -0.09
MSX2P35548 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC14.49□□□□□ -0.09
MSX2P35548 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
MSX2P35548 CLCNKA-202ENST00000375692 2581 ntAPPRIS ALT1 TSL 1 (best) BASIC14.49□□□□□ -0.09
MSX2P35548 GRIN1-207ENST00000371560 3640 ntAPPRIS ALT1 TSL 1 (best) BASIC14.49□□□□□ -0.09
MSX2P35548 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC14.49□□□□□ -0.09
MSX2P35548 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
MSX2P35548 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
MSX2P35548 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
MSX2P35548 SCARB2-227ENST00000640957 3255 ntAPPRIS ALT1 TSL 5 BASIC14.49□□□□□ -0.09
MSX2P35548 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
MSX2P35548 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
MSX2P35548 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
MSX2P35548 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
MSX2P35548 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
MSX2P35548 AC074338.1-201ENST00000416825 156 ntBASIC14.49□□□□□ -0.09
MSX2P35548 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC14.49□□□□□ -0.09
MSX2P35548 LILRB5-203ENST00000449561 2137 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
MSX2P35548 PFN2-205ENST00000461868 613 ntTSL 2 BASIC14.49□□□□□ -0.09
MSX2P35548 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC14.49□□□□□ -0.09
MSX2P35548 PP7080-204ENST00000510714 601 ntTSL 3 BASIC14.49□□□□□ -0.09
MSX2P35548 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC14.49□□□□□ -0.09
MSX2P35548 SLC25A39P2-201ENST00000537614 270 ntBASIC14.49□□□□□ -0.09
MSX2P35548 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms