Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 ZNF124-206ENST00000543802 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL8A1P27658 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC13.21□□□□□ -0.29
COL8A1P27658 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC13.21□□□□□ -0.29
COL8A1P27658 C2orf69P1-201ENST00000563532 1093 ntBASIC13.21□□□□□ -0.29
COL8A1P27658 DNM1P30-201ENST00000563586 452 ntBASIC13.21□□□□□ -0.29
COL8A1P27658 AL022344.2-201ENST00000568976 968 ntBASIC13.21□□□□□ -0.29
COL8A1P27658 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC13.21□□□□□ -0.29
COL8A1P27658 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC13.21□□□□□ -0.29
COL8A1P27658 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL8A1P27658 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC13.21□□□□□ -0.29
COL8A1P27658 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC13.21□□□□□ -0.29
COL8A1P27658 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL8A1P27658 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
COL8A1P27658 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL8A1P27658 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC13.21□□□□□ -0.29
COL8A1P27658 ABR-203ENST00000536794 2213 ntTSL 2 BASIC13.21□□□□□ -0.29
COL8A1P27658 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC13.21□□□□□ -0.3
COL8A1P27658 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC13.21□□□□□ -0.3
COL8A1P27658 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
COL8A1P27658 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
COL8A1P27658 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.3
COL8A1P27658 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.3
COL8A1P27658 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC13.21□□□□□ -0.3
COL8A1P27658 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC13.21□□□□□ -0.3
COL8A1P27658 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.3
COL8A1P27658 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL8A1P27658 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
COL8A1P27658 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
COL8A1P27658 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL8A1P27658 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
COL8A1P27658 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL8A1P27658 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL8A1P27658 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL8A1P27658 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
COL8A1P27658 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL8A1P27658 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
COL8A1P27658 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC13.2□□□□□ -0.3
COL8A1P27658 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL8A1P27658 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL8A1P27658 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
COL8A1P27658 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
COL8A1P27658 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC13.2□□□□□ -0.3
COL8A1P27658 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL8A1P27658 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL8A1P27658 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL8A1P27658 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC13.2□□□□□ -0.3
COL8A1P27658 TNFSF11-201ENST00000239849 911 ntTSL 5 BASIC13.2□□□□□ -0.3
COL8A1P27658 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL8A1P27658 AL139094.1-201ENST00000405549 1188 ntBASIC13.2□□□□□ -0.3
COL8A1P27658 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL8A1P27658 EIF3FP3-201ENST00000434851 1086 ntBASIC13.2□□□□□ -0.3
COL8A1P27658 AL139008.1-201ENST00000437894 228 ntBASIC13.2□□□□□ -0.3
COL8A1P27658 NAGK-204ENST00000443872 878 ntTSL 3 BASIC13.2□□□□□ -0.3
COL8A1P27658 C3orf38-204ENST00000486971 1259 ntTSL 2 BASIC13.2□□□□□ -0.3
COL8A1P27658 RCC2P8-201ENST00000502779 1035 ntBASIC13.2□□□□□ -0.3
COL8A1P27658 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC13.2□□□□□ -0.3
COL8A1P27658 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC13.2□□□□□ -0.3
COL8A1P27658 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC13.2□□□□□ -0.3
COL8A1P27658 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
COL8A1P27658 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC13.2□□□□□ -0.3
COL8A1P27658 AC100827.2-201ENST00000563214 1194 ntBASIC13.2□□□□□ -0.3
COL8A1P27658 MIR4683-201ENST00000579659 81 ntBASIC13.2□□□□□ -0.3
COL8A1P27658 KRT16P3-202ENST00000580113 1012 ntTSL 3 BASIC13.2□□□□□ -0.3
COL8A1P27658 MIR4783-201ENST00000580343 82 ntBASIC13.2□□□□□ -0.3
COL8A1P27658 KRT16P1-203ENST00000581027 1012 ntTSL 5 BASIC13.2□□□□□ -0.3
COL8A1P27658 RN7SL596P-201ENST00000582123 288 ntBASIC13.2□□□□□ -0.3
COL8A1P27658 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC13.2□□□□□ -0.3
COL8A1P27658 AC104333.4-201ENST00000632866 554 ntTSL 3 BASIC13.2□□□□□ -0.3
COL8A1P27658 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL8A1P27658 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL8A1P27658 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL8A1P27658 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL8A1P27658 AMT-204ENST00000427987 1646 ntTSL 5 BASIC13.2□□□□□ -0.3
COL8A1P27658 AMT-233ENST00000636522 1620 ntTSL 2 BASIC13.2□□□□□ -0.3
COL8A1P27658 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
COL8A1P27658 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC13.2□□□□□ -0.3
COL8A1P27658 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL8A1P27658 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
COL8A1P27658 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
COL8A1P27658 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL8A1P27658 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC13.2□□□□□ -0.3
COL8A1P27658 LINC02537-201ENST00000635943 1367 ntTSL 4 BASIC13.2□□□□□ -0.3
COL8A1P27658 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
COL8A1P27658 HYMAI-201ENST00000635591 3347 ntBASIC13.19□□□□□ -0.3
COL8A1P27658 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL8A1P27658 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL8A1P27658 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL8A1P27658 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC13.19□□□□□ -0.3
COL8A1P27658 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL8A1P27658 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL8A1P27658 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC13.19□□□□□ -0.3
COL8A1P27658 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL8A1P27658 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC13.19□□□□□ -0.3
COL8A1P27658 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL8A1P27658 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC13.19□□□□□ -0.3
COL8A1P27658 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
COL8A1P27658 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
COL8A1P27658 LRRFIP1P1-201ENST00000498774 2246 ntBASIC13.19□□□□□ -0.3
COL8A1P27658 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL8A1P27658 AL161772.1-201ENST00000610494 4412 ntBASIC13.19□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms