Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ERCC3P19447 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
ERCC3P19447 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
ERCC3P19447 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
ERCC3P19447 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ERCC3P19447 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC17.52■□□□□ 0.4
ERCC3P19447 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
ERCC3P19447 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ERCC3P19447 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ERCC3P19447 AC127383.1-201ENST00000444697 1800 ntBASIC17.52■□□□□ 0.4
ERCC3P19447 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ERCC3P19447 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
ERCC3P19447 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
ERCC3P19447 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
ERCC3P19447 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
ERCC3P19447 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC17.52■□□□□ 0.4
ERCC3P19447 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ERCC3P19447 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ERCC3P19447 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ERCC3P19447 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
ERCC3P19447 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
ERCC3P19447 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
ERCC3P19447 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
ERCC3P19447 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
ERCC3P19447 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC17.52■□□□□ 0.4
ERCC3P19447 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC17.52■□□□□ 0.4
ERCC3P19447 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC17.52■□□□□ 0.4
ERCC3P19447 RNA5SP423-201ENST00000517127 109 ntBASIC17.52■□□□□ 0.4
ERCC3P19447 RNF41-210ENST00000552244 716 ntTSL 3 BASIC17.52■□□□□ 0.4
ERCC3P19447 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC17.52■□□□□ 0.4
ERCC3P19447 NAT9-222ENST00000583476 583 ntTSL 3 BASIC17.52■□□□□ 0.4
ERCC3P19447 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ERCC3P19447 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC17.52■□□□□ 0.4
ERCC3P19447 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ERCC3P19447 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC17.52■□□□□ 0.4
ERCC3P19447 SSR4P1-203ENST00000599569 2260 ntBASIC17.52■□□□□ 0.4
ERCC3P19447 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC17.52■□□□□ 0.4
ERCC3P19447 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
ERCC3P19447 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
ERCC3P19447 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.39
ERCC3P19447 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC17.52■□□□□ 0.39
ERCC3P19447 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC17.52■□□□□ 0.39
ERCC3P19447 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
ERCC3P19447 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
ERCC3P19447 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
ERCC3P19447 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
ERCC3P19447 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ERCC3P19447 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ERCC3P19447 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
ERCC3P19447 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
ERCC3P19447 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
ERCC3P19447 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC17.51■□□□□ 0.39
ERCC3P19447 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
ERCC3P19447 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
ERCC3P19447 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC17.51■□□□□ 0.39
ERCC3P19447 ANKRD30BP2-201ENST00000435744 1610 ntBASIC17.51■□□□□ 0.39
ERCC3P19447 DKFZP434H168-201ENST00000567381 1905 ntBASIC17.51■□□□□ 0.39
ERCC3P19447 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ERCC3P19447 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ERCC3P19447 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ERCC3P19447 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ERCC3P19447 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ERCC3P19447 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC17.51■□□□□ 0.39
ERCC3P19447 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC17.51■□□□□ 0.39
ERCC3P19447 CSH2-202ENST00000345366 598 ntTSL 5 BASIC17.51■□□□□ 0.39
ERCC3P19447 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC17.51■□□□□ 0.39
ERCC3P19447 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
ERCC3P19447 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC17.51■□□□□ 0.39
ERCC3P19447 AC079178.1-201ENST00000420915 656 ntBASIC17.51■□□□□ 0.39
ERCC3P19447 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC17.51■□□□□ 0.39
ERCC3P19447 REEP1-202ENST00000453231 940 ntTSL 2 BASIC17.51■□□□□ 0.39
ERCC3P19447 ADM-202ENST00000524948 584 ntTSL 2 BASIC17.51■□□□□ 0.39
ERCC3P19447 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC17.51■□□□□ 0.39
ERCC3P19447 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
ERCC3P19447 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC17.51■□□□□ 0.39
ERCC3P19447 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
ERCC3P19447 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC17.51■□□□□ 0.39
ERCC3P19447 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
ERCC3P19447 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC17.51■□□□□ 0.39
ERCC3P19447 AL451050.2-201ENST00000606967 682 ntBASIC17.51■□□□□ 0.39
ERCC3P19447 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC17.51■□□□□ 0.39
ERCC3P19447 AC244157.2-201ENST00000616239 1006 ntBASIC17.51■□□□□ 0.39
ERCC3P19447 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC17.51■□□□□ 0.39
ERCC3P19447 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC17.51■□□□□ 0.39
ERCC3P19447 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC17.51■□□□□ 0.39
ERCC3P19447 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC17.51■□□□□ 0.39
ERCC3P19447 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ERCC3P19447 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC17.51■□□□□ 0.39
ERCC3P19447 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC17.51■□□□□ 0.39
ERCC3P19447 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
ERCC3P19447 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC17.51■□□□□ 0.39
ERCC3P19447 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ERCC3P19447 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ERCC3P19447 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
ERCC3P19447 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC17.51■□□□□ 0.39
ERCC3P19447 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ERCC3P19447 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC17.51■□□□□ 0.39
ERCC3P19447 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
ERCC3P19447 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC17.5■□□□□ 0.39
ERCC3P19447 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms