Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SEMA3DO95025 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SEMA3DO95025 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SEMA3DO95025 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SEMA3DO95025 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SEMA3DO95025 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SEMA3DO95025 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
SEMA3DO95025 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC14.57□□□□□ -0.08
SEMA3DO95025 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SEMA3DO95025 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SEMA3DO95025 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC14.57□□□□□ -0.08
SEMA3DO95025 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SEMA3DO95025 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
SEMA3DO95025 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SEMA3DO95025 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC14.56□□□□□ -0.08
SEMA3DO95025 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC14.56□□□□□ -0.08
SEMA3DO95025 KCP-203ENST00000610776 5108 ntTSL 5 BASIC14.56□□□□□ -0.08
SEMA3DO95025 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SEMA3DO95025 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC14.56□□□□□ -0.08
SEMA3DO95025 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SEMA3DO95025 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
SEMA3DO95025 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
SEMA3DO95025 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
SEMA3DO95025 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC14.56□□□□□ -0.08
SEMA3DO95025 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
SEMA3DO95025 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC14.56□□□□□ -0.08
SEMA3DO95025 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SEMA3DO95025 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SEMA3DO95025 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SEMA3DO95025 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
SEMA3DO95025 NSL1-201ENST00000366976 722 ntTSL 2 BASIC14.56□□□□□ -0.08
SEMA3DO95025 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SEMA3DO95025 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SEMA3DO95025 C1QBPP1-201ENST00000400117 770 ntBASIC14.56□□□□□ -0.08
SEMA3DO95025 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC14.56□□□□□ -0.08
SEMA3DO95025 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC14.56□□□□□ -0.08
SEMA3DO95025 HLA-K-203ENST00000430151 1046 ntBASIC14.56□□□□□ -0.08
SEMA3DO95025 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC14.56□□□□□ -0.08
SEMA3DO95025 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC14.56□□□□□ -0.08
SEMA3DO95025 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC14.56□□□□□ -0.08
SEMA3DO95025 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC14.56□□□□□ -0.08
SEMA3DO95025 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC14.56□□□□□ -0.08
SEMA3DO95025 AC123567.1-201ENST00000548294 1261 ntBASIC14.56□□□□□ -0.08
SEMA3DO95025 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC14.56□□□□□ -0.08
SEMA3DO95025 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC14.56□□□□□ -0.08
SEMA3DO95025 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC14.56□□□□□ -0.08
SEMA3DO95025 TMEM261P1-201ENST00000604899 340 ntBASIC14.56□□□□□ -0.08
SEMA3DO95025 BX539320.1-201ENST00000623759 877 ntBASIC14.56□□□□□ -0.08
SEMA3DO95025 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SEMA3DO95025 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SEMA3DO95025 AC007191.1-201ENST00000623179 2995 ntBASIC14.56□□□□□ -0.08
SEMA3DO95025 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SEMA3DO95025 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC14.56□□□□□ -0.08
SEMA3DO95025 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SEMA3DO95025 ST20-AS1-201ENST00000560255 4223 ntBASIC14.56□□□□□ -0.08
SEMA3DO95025 CNTNAP3P2-201ENST00000617175 3861 ntBASIC14.56□□□□□ -0.08
SEMA3DO95025 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
SEMA3DO95025 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SEMA3DO95025 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SEMA3DO95025 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC14.55□□□□□ -0.08
SEMA3DO95025 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC14.55□□□□□ -0.08
SEMA3DO95025 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
SEMA3DO95025 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC14.55□□□□□ -0.08
SEMA3DO95025 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
SEMA3DO95025 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SEMA3DO95025 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
SEMA3DO95025 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC14.55□□□□□ -0.08
SEMA3DO95025 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC14.55□□□□□ -0.08
SEMA3DO95025 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SEMA3DO95025 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SEMA3DO95025 AC007686.3-201ENST00000619017 3487 ntBASIC14.55□□□□□ -0.08
SEMA3DO95025 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
SEMA3DO95025 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SEMA3DO95025 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SEMA3DO95025 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SEMA3DO95025 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SEMA3DO95025 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SEMA3DO95025 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SEMA3DO95025 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
SEMA3DO95025 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC14.55□□□□□ -0.08
SEMA3DO95025 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC14.55□□□□□ -0.08
SEMA3DO95025 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
SEMA3DO95025 LINC02560-201ENST00000596379 459 ntBASIC14.55□□□□□ -0.08
SEMA3DO95025 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC14.55□□□□□ -0.08
SEMA3DO95025 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC14.55□□□□□ -0.08
SEMA3DO95025 MIR8072-201ENST00000614241 80 ntBASIC14.55□□□□□ -0.08
SEMA3DO95025 AC008761.3-201ENST00000624803 892 ntBASIC14.55□□□□□ -0.08
SEMA3DO95025 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SEMA3DO95025 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SEMA3DO95025 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SEMA3DO95025 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
SEMA3DO95025 KRT8P22-201ENST00000562317 1415 ntBASIC14.55□□□□□ -0.08
SEMA3DO95025 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
SEMA3DO95025 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SEMA3DO95025 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SEMA3DO95025 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC14.55□□□□□ -0.08
SEMA3DO95025 AC126335.2-201ENST00000623362 4637 ntBASIC14.55□□□□□ -0.08
SEMA3DO95025 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC14.55□□□□□ -0.08
SEMA3DO95025 AC138969.2-201ENST00000532739 9932 ntBASIC14.55□□□□□ -0.08
SEMA3DO95025 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 62.6 ms