Protein–RNA interactions for Protein: Q9H1A7

POLR2J3, DNA-directed RNA polymerase II subunit RPB11-b2, humanhuman

Known RBP Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3Q9H1A7 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 AC006504.5-208ENST00000588784 2401 ntBASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 WRB-204ENST00000398753 699 ntTSL 3 BASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 SLBP-205ENST00000488267 987 ntTSL 2 BASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 AC109322.1-201ENST00000524499 1264 ntBASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 AC092865.5-201ENST00000545435 363 ntBASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 SSH2-210ENST00000582084 560 ntTSL 3 BASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 INO80C-210ENST00000590757 595 ntTSL 2 BASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 AL158211.3-201ENST00000607385 239 ntBASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 Z92544.3-201ENST00000624747 417 ntBASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 LILRP1-201ENST00000444199 1370 ntBASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 BTBD7P1-201ENST00000447253 1453 ntBASIC14.06□□□□□ -0.16
POLR2J3Q9H1A7 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
POLR2J3Q9H1A7 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
POLR2J3Q9H1A7 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
POLR2J3Q9H1A7 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC14.05□□□□□ -0.16
POLR2J3Q9H1A7 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
POLR2J3Q9H1A7 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
POLR2J3Q9H1A7 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
POLR2J3Q9H1A7 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
POLR2J3Q9H1A7 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
POLR2J3Q9H1A7 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
POLR2J3Q9H1A7 AC087386.2-201ENST00000623212 4637 ntBASIC14.05□□□□□ -0.16
POLR2J3Q9H1A7 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
POLR2J3Q9H1A7 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
POLR2J3Q9H1A7 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
POLR2J3Q9H1A7 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
POLR2J3Q9H1A7 KRT18P13-201ENST00000400056 1290 ntBASIC14.05□□□□□ -0.16
POLR2J3Q9H1A7 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
POLR2J3Q9H1A7 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC14.05□□□□□ -0.16
POLR2J3Q9H1A7 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC14.05□□□□□ -0.16
POLR2J3Q9H1A7 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC14.05□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms