Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 SETD1B-202ENST00000542440 8185 ntAPPRIS P2 TSL 5 BASIC13.29□□□□□ -0.28
CCDC54Q8NEL0 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
CCDC54Q8NEL0 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC54Q8NEL0 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC13.29□□□□□ -0.28
CCDC54Q8NEL0 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC13.29□□□□□ -0.28
CCDC54Q8NEL0 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC13.29□□□□□ -0.28
CCDC54Q8NEL0 CAND2-204ENST00000456430 4573 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC54Q8NEL0 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC13.29□□□□□ -0.28
CCDC54Q8NEL0 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC13.29□□□□□ -0.28
CCDC54Q8NEL0 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC54Q8NEL0 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC13.29□□□□□ -0.28
CCDC54Q8NEL0 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC54Q8NEL0 TSEN15P1-201ENST00000423257 515 ntBASIC13.29□□□□□ -0.28
CCDC54Q8NEL0 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC13.29□□□□□ -0.28
CCDC54Q8NEL0 KLF2P3-201ENST00000451977 1087 ntBASIC13.29□□□□□ -0.28
CCDC54Q8NEL0 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC13.29□□□□□ -0.28
CCDC54Q8NEL0 AC125807.1-201ENST00000483097 614 ntBASIC13.29□□□□□ -0.28
CCDC54Q8NEL0 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC13.29□□□□□ -0.28
CCDC54Q8NEL0 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC13.29□□□□□ -0.28
CCDC54Q8NEL0 SSH2-210ENST00000582084 560 ntTSL 3 BASIC13.29□□□□□ -0.28
CCDC54Q8NEL0 AL158211.3-201ENST00000607385 239 ntBASIC13.29□□□□□ -0.28
CCDC54Q8NEL0 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC13.29□□□□□ -0.28
CCDC54Q8NEL0 AL109936.8-201ENST00000641772 604 ntBASIC13.29□□□□□ -0.28
CCDC54Q8NEL0 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC54Q8NEL0 SYBU-235ENST00000533895 3244 ntAPPRIS P4 TSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC54Q8NEL0 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC54Q8NEL0 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC13.29□□□□□ -0.28
CCDC54Q8NEL0 AC131212.3-201ENST00000624087 4219 ntBASIC13.29□□□□□ -0.28
CCDC54Q8NEL0 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC54Q8NEL0 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC13.29□□□□□ -0.28
CCDC54Q8NEL0 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC54Q8NEL0 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC54Q8NEL0 AC023908.3-201ENST00000564211 3047 ntBASIC13.29□□□□□ -0.28
CCDC54Q8NEL0 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC54Q8NEL0 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC13.29□□□□□ -0.28
CCDC54Q8NEL0 KIF1A-213ENST00000498729 9221 ntTSL 5 BASIC13.28□□□□□ -0.28
CCDC54Q8NEL0 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC54Q8NEL0 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC54Q8NEL0 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC13.28□□□□□ -0.28
CCDC54Q8NEL0 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC54Q8NEL0 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC54Q8NEL0 GSE1-202ENST00000393243 7140 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC54Q8NEL0 AFF1-201ENST00000307808 9390 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC54Q8NEL0 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC54Q8NEL0 PER3-209ENST00000614998 6261 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC54Q8NEL0 LINC00384-201ENST00000437721 6852 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC54Q8NEL0 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC54Q8NEL0 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC54Q8NEL0 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC54Q8NEL0 MBTD1-204ENST00000586178 5382 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
CCDC54Q8NEL0 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC13.28□□□□□ -0.28
CCDC54Q8NEL0 NIN-202ENST00000324330 4364 ntTSL 5 BASIC13.28□□□□□ -0.28
CCDC54Q8NEL0 CAD-202ENST00000403525 6900 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC54Q8NEL0 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC54Q8NEL0 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC54Q8NEL0 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC13.28□□□□□ -0.28
CCDC54Q8NEL0 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC13.28□□□□□ -0.28
CCDC54Q8NEL0 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC13.28□□□□□ -0.28
CCDC54Q8NEL0 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC54Q8NEL0 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC13.28□□□□□ -0.28
CCDC54Q8NEL0 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC13.28□□□□□ -0.28
CCDC54Q8NEL0 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC13.28□□□□□ -0.28
CCDC54Q8NEL0 AC027612.4-201ENST00000605371 583 ntBASIC13.28□□□□□ -0.28
CCDC54Q8NEL0 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC13.28□□□□□ -0.28
CCDC54Q8NEL0 AC134684.3-201ENST00000641758 218 ntBASIC13.28□□□□□ -0.28
CCDC54Q8NEL0 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC54Q8NEL0 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC13.28□□□□□ -0.28
CCDC54Q8NEL0 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC54Q8NEL0 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC54Q8NEL0 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC54Q8NEL0 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC54Q8NEL0 SUGP2-203ENST00000452918 6176 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC54Q8NEL0 LILRP1-201ENST00000444199 1370 ntBASIC13.28□□□□□ -0.28
CCDC54Q8NEL0 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC13.28□□□□□ -0.28
CCDC54Q8NEL0 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC13.28□□□□□ -0.28
CCDC54Q8NEL0 DGKE-201ENST00000284061 8660 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC54Q8NEL0 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
CCDC54Q8NEL0 TPO-203ENST00000346956 2923 ntTSL 5 BASIC13.28□□□□□ -0.28
CCDC54Q8NEL0 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC13.28□□□□□ -0.28
CCDC54Q8NEL0 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC54Q8NEL0 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC54Q8NEL0 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC13.28□□□□□ -0.28
CCDC54Q8NEL0 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC13.28□□□□□ -0.28
CCDC54Q8NEL0 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC13.28□□□□□ -0.28
CCDC54Q8NEL0 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CCDC54Q8NEL0 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
CCDC54Q8NEL0 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC13.27□□□□□ -0.28
CCDC54Q8NEL0 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC13.27□□□□□ -0.28
CCDC54Q8NEL0 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.28
CCDC54Q8NEL0 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC13.27□□□□□ -0.28
CCDC54Q8NEL0 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC13.27□□□□□ -0.28
CCDC54Q8NEL0 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
CCDC54Q8NEL0 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC13.27□□□□□ -0.28
CCDC54Q8NEL0 AC005089.1-201ENST00000619486 2241 ntBASIC13.27□□□□□ -0.28
CCDC54Q8NEL0 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
CCDC54Q8NEL0 TNS2-219ENST00000552570 4714 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 AGBL3-202ENST00000435976 2495 ntTSL 5 BASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
CCDC54Q8NEL0 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms