Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC17.76■□□□□ 0.43
SMC1BQ8NDV3 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SMC1BQ8NDV3 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC17.75■□□□□ 0.43
SMC1BQ8NDV3 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SMC1BQ8NDV3 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SMC1BQ8NDV3 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SMC1BQ8NDV3 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
SMC1BQ8NDV3 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SMC1BQ8NDV3 NIFK-AS1-203ENST00000419902 1316 ntTSL 2 BASIC17.75■□□□□ 0.43
SMC1BQ8NDV3 CCL18-201ENST00000616054 1324 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SMC1BQ8NDV3 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SMC1BQ8NDV3 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SMC1BQ8NDV3 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC17.75■□□□□ 0.43
SMC1BQ8NDV3 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
SMC1BQ8NDV3 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SMC1BQ8NDV3 AC018695.7-201ENST00000624587 2492 ntBASIC17.75■□□□□ 0.43
SMC1BQ8NDV3 AC009093.2-202ENST00000620513 2079 ntBASIC17.75■□□□□ 0.43
SMC1BQ8NDV3 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
SMC1BQ8NDV3 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
SMC1BQ8NDV3 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC17.75■□□□□ 0.43
SMC1BQ8NDV3 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SMC1BQ8NDV3 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SMC1BQ8NDV3 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SMC1BQ8NDV3 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SMC1BQ8NDV3 AC019118.2-201ENST00000425776 718 ntTSL 5 BASIC17.75■□□□□ 0.43
SMC1BQ8NDV3 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC17.75■□□□□ 0.43
SMC1BQ8NDV3 MIR3188-201ENST00000583494 85 ntBASIC17.75■□□□□ 0.43
SMC1BQ8NDV3 MIR6720-201ENST00000611664 98 ntBASIC17.75■□□□□ 0.43
SMC1BQ8NDV3 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
SMC1BQ8NDV3 CMC2-224ENST00000630396 481 ntTSL 5 BASIC17.75■□□□□ 0.43
SMC1BQ8NDV3 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SMC1BQ8NDV3 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC17.75■□□□□ 0.43
SMC1BQ8NDV3 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC17.75■□□□□ 0.43
SMC1BQ8NDV3 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SMC1BQ8NDV3 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SMC1BQ8NDV3 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SMC1BQ8NDV3 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SMC1BQ8NDV3 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SMC1BQ8NDV3 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
SMC1BQ8NDV3 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SMC1BQ8NDV3 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC17.74■□□□□ 0.43
SMC1BQ8NDV3 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SMC1BQ8NDV3 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
SMC1BQ8NDV3 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC17.74■□□□□ 0.43
SMC1BQ8NDV3 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SMC1BQ8NDV3 FLII-221ENST00000578558 2377 ntTSL 5 BASIC17.74■□□□□ 0.43
SMC1BQ8NDV3 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC17.74■□□□□ 0.43
SMC1BQ8NDV3 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC17.74■□□□□ 0.43
SMC1BQ8NDV3 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SMC1BQ8NDV3 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC17.74■□□□□ 0.43
SMC1BQ8NDV3 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
SMC1BQ8NDV3 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SMC1BQ8NDV3 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
SMC1BQ8NDV3 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SMC1BQ8NDV3 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SMC1BQ8NDV3 COX8A-201ENST00000314133 507 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SMC1BQ8NDV3 ATP5J-202ENST00000400087 826 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
SMC1BQ8NDV3 NAA60-205ENST00000424546 1149 ntTSL 2 BASIC17.74■□□□□ 0.43
SMC1BQ8NDV3 SMAD9-IT1-201ENST00000437983 504 ntTSL 3 BASIC17.74■□□□□ 0.43
SMC1BQ8NDV3 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC17.74■□□□□ 0.43
SMC1BQ8NDV3 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC17.74■□□□□ 0.43
SMC1BQ8NDV3 RN7SL494P-201ENST00000461517 304 ntBASIC17.74■□□□□ 0.43
SMC1BQ8NDV3 LINC00173-201ENST00000470091 435 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SMC1BQ8NDV3 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC17.74■□□□□ 0.43
SMC1BQ8NDV3 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
SMC1BQ8NDV3 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
SMC1BQ8NDV3 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
SMC1BQ8NDV3 IGHV3OR15-7-201ENST00000558565 359 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
SMC1BQ8NDV3 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC17.74■□□□□ 0.43
SMC1BQ8NDV3 RPS5-204ENST00000598098 536 ntTSL 2 BASIC17.74■□□□□ 0.43
SMC1BQ8NDV3 TTC23L-209ENST00000638320 1185 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
SMC1BQ8NDV3 AL645728.2-202ENST00000641679 227 ntBASIC17.74■□□□□ 0.43
SMC1BQ8NDV3 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
SMC1BQ8NDV3 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
SMC1BQ8NDV3 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
SMC1BQ8NDV3 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SMC1BQ8NDV3 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
SMC1BQ8NDV3 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
SMC1BQ8NDV3 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC17.74■□□□□ 0.43
SMC1BQ8NDV3 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC17.74■□□□□ 0.43
SMC1BQ8NDV3 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SMC1BQ8NDV3 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SMC1BQ8NDV3 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SMC1BQ8NDV3 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SMC1BQ8NDV3 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC17.73■□□□□ 0.43
SMC1BQ8NDV3 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SMC1BQ8NDV3 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC17.73■□□□□ 0.43
SMC1BQ8NDV3 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC17.73■□□□□ 0.43
SMC1BQ8NDV3 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SMC1BQ8NDV3 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
SMC1BQ8NDV3 CD74-202ENST00000353334 1449 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SMC1BQ8NDV3 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SMC1BQ8NDV3 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SMC1BQ8NDV3 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SMC1BQ8NDV3 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
SMC1BQ8NDV3 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC17.73■□□□□ 0.43
SMC1BQ8NDV3 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SMC1BQ8NDV3 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SMC1BQ8NDV3 GTF3C6-201ENST00000329970 952 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SMC1BQ8NDV3 BGLAP-201ENST00000368272 732 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms