Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
SYNE4Q8N205 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
SYNE4Q8N205 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
SYNE4Q8N205 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
SYNE4Q8N205 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC18.63■□□□□ 0.57
SYNE4Q8N205 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SYNE4Q8N205 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SYNE4Q8N205 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC18.63■□□□□ 0.57
SYNE4Q8N205 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SYNE4Q8N205 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SYNE4Q8N205 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SYNE4Q8N205 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SYNE4Q8N205 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC18.63■□□□□ 0.57
SYNE4Q8N205 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SYNE4Q8N205 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC18.63■□□□□ 0.57
SYNE4Q8N205 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC18.63■□□□□ 0.57
SYNE4Q8N205 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC18.63■□□□□ 0.57
SYNE4Q8N205 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
SYNE4Q8N205 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SYNE4Q8N205 AC005962.1-201ENST00000584100 773 ntBASIC18.63■□□□□ 0.57
SYNE4Q8N205 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SYNE4Q8N205 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC18.63■□□□□ 0.57
SYNE4Q8N205 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
SYNE4Q8N205 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
SYNE4Q8N205 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SYNE4Q8N205 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC18.63■□□□□ 0.57
SYNE4Q8N205 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SYNE4Q8N205 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SYNE4Q8N205 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
SYNE4Q8N205 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
SYNE4Q8N205 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC18.63■□□□□ 0.57
SYNE4Q8N205 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SYNE4Q8N205 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SYNE4Q8N205 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC18.63■□□□□ 0.57
SYNE4Q8N205 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SYNE4Q8N205 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SYNE4Q8N205 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
SYNE4Q8N205 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SYNE4Q8N205 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC18.63■□□□□ 0.57
SYNE4Q8N205 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
SYNE4Q8N205 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SYNE4Q8N205 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SYNE4Q8N205 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SYNE4Q8N205 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SYNE4Q8N205 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC18.62■□□□□ 0.57
SYNE4Q8N205 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SYNE4Q8N205 ZEB1-AS1-208ENST00000607166 2503 ntBASIC18.62■□□□□ 0.57
SYNE4Q8N205 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SYNE4Q8N205 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SYNE4Q8N205 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
SYNE4Q8N205 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
SYNE4Q8N205 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SYNE4Q8N205 SERF2-209ENST00000409646 559 ntTSL 4 BASIC18.62■□□□□ 0.57
SYNE4Q8N205 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
SYNE4Q8N205 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC18.62■□□□□ 0.57
SYNE4Q8N205 AC104784.1-201ENST00000473096 294 ntBASIC18.62■□□□□ 0.57
SYNE4Q8N205 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC18.62■□□□□ 0.57
SYNE4Q8N205 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC18.62■□□□□ 0.57
SYNE4Q8N205 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC18.62■□□□□ 0.57
SYNE4Q8N205 CENPX-208ENST00000584347 799 ntTSL 2 BASIC18.62■□□□□ 0.57
SYNE4Q8N205 AC008805.1-201ENST00000590892 364 ntBASIC18.62■□□□□ 0.57
SYNE4Q8N205 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC18.62■□□□□ 0.57
SYNE4Q8N205 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC18.62■□□□□ 0.57
SYNE4Q8N205 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
SYNE4Q8N205 FAM90A7P-201ENST00000382628 1395 ntBASIC18.62■□□□□ 0.57
SYNE4Q8N205 FAM90A23P-201ENST00000400136 1395 ntBASIC18.62■□□□□ 0.57
SYNE4Q8N205 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SYNE4Q8N205 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SYNE4Q8N205 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SYNE4Q8N205 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC18.62■□□□□ 0.57
SYNE4Q8N205 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC18.62■□□□□ 0.57
SYNE4Q8N205 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SYNE4Q8N205 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SYNE4Q8N205 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SYNE4Q8N205 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SYNE4Q8N205 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
SYNE4Q8N205 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SYNE4Q8N205 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SYNE4Q8N205 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SYNE4Q8N205 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SYNE4Q8N205 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
SYNE4Q8N205 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC18.61■□□□□ 0.57
SYNE4Q8N205 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SYNE4Q8N205 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC18.61■□□□□ 0.57
SYNE4Q8N205 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SYNE4Q8N205 SALL4P5-201ENST00000419001 1760 ntBASIC18.61■□□□□ 0.57
SYNE4Q8N205 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC18.61■□□□□ 0.57
SYNE4Q8N205 AL157791.1-201ENST00000553667 1699 ntBASIC18.61■□□□□ 0.57
SYNE4Q8N205 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC18.61■□□□□ 0.57
SYNE4Q8N205 AC126365.1-201ENST00000578585 1514 ntBASIC18.61■□□□□ 0.57
SYNE4Q8N205 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SYNE4Q8N205 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SYNE4Q8N205 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SYNE4Q8N205 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SYNE4Q8N205 AL008718.2-201ENST00000609206 1313 ntBASIC18.61■□□□□ 0.57
SYNE4Q8N205 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SYNE4Q8N205 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC18.61■□□□□ 0.57
SYNE4Q8N205 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SYNE4Q8N205 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SYNE4Q8N205 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms