Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AL022334.2-201ENST00000610000 484 ntBASIC18.11■□□□□ 0.49
CCDC88AQ3V6T2 DDX5-235ENST00000630471 473 ntTSL 4 BASIC18.11■□□□□ 0.49
CCDC88AQ3V6T2 CEP128-201ENST00000216517 1606 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC88AQ3V6T2 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC88AQ3V6T2 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC88AQ3V6T2 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC88AQ3V6T2 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
CCDC88AQ3V6T2 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC88AQ3V6T2 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC88AQ3V6T2 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC18.11■□□□□ 0.49
CCDC88AQ3V6T2 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC88AQ3V6T2 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC18.1■□□□□ 0.49
CCDC88AQ3V6T2 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC88AQ3V6T2 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC88AQ3V6T2 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC18.1■□□□□ 0.49
CCDC88AQ3V6T2 COX20P1-201ENST00000366529 357 ntBASIC18.1■□□□□ 0.49
CCDC88AQ3V6T2 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC88AQ3V6T2 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC88AQ3V6T2 STK16-203ENST00000409516 895 ntTSL 2 BASIC18.1■□□□□ 0.49
CCDC88AQ3V6T2 CNRIP1-202ENST00000409559 644 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC88AQ3V6T2 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC88AQ3V6T2 PUDPP3-201ENST00000445368 636 ntBASIC18.1■□□□□ 0.49
CCDC88AQ3V6T2 RPSAP15-201ENST00000448168 861 ntBASIC18.1■□□□□ 0.49
CCDC88AQ3V6T2 RN7SL396P-201ENST00000471086 295 ntBASIC18.1■□□□□ 0.49
CCDC88AQ3V6T2 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC18.1■□□□□ 0.49
CCDC88AQ3V6T2 TMBIM4-208ENST00000542724 770 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC88AQ3V6T2 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
CCDC88AQ3V6T2 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC88AQ3V6T2 AC018761.2-201ENST00000585496 296 ntTSL 3 BASIC18.1■□□□□ 0.49
CCDC88AQ3V6T2 DGAT2L7P-201ENST00000602462 744 ntBASIC18.1■□□□□ 0.49
CCDC88AQ3V6T2 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC88AQ3V6T2 LINC01815-202ENST00000641468 1409 ntBASIC18.1■□□□□ 0.49
CCDC88AQ3V6T2 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC88AQ3V6T2 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC88AQ3V6T2 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC88AQ3V6T2 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC18.1■□□□□ 0.49
CCDC88AQ3V6T2 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC88AQ3V6T2 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC18.1■□□□□ 0.49
CCDC88AQ3V6T2 RAN-210ENST00000541630 1475 ntTSL 2 BASIC18.1■□□□□ 0.49
CCDC88AQ3V6T2 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC88AQ3V6T2 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC88AQ3V6T2 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC88AQ3V6T2 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC88AQ3V6T2 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC88AQ3V6T2 HBB-201ENST00000335295 628 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC88AQ3V6T2 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC88AQ3V6T2 AL645933.1-201ENST00000440087 609 ntBASIC18.09■□□□□ 0.49
CCDC88AQ3V6T2 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
CCDC88AQ3V6T2 LINC02081-203ENST00000591384 867 ntTSL 3 BASIC18.09■□□□□ 0.49
CCDC88AQ3V6T2 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
CCDC88AQ3V6T2 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC18.09■□□□□ 0.49
CCDC88AQ3V6T2 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC88AQ3V6T2 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC18.09■□□□□ 0.49
CCDC88AQ3V6T2 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC88AQ3V6T2 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC88AQ3V6T2 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC18.09■□□□□ 0.49
CCDC88AQ3V6T2 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC88AQ3V6T2 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC88AQ3V6T2 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC18.09■□□□□ 0.49
CCDC88AQ3V6T2 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC18.09■□□□□ 0.49
CCDC88AQ3V6T2 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC18.09■□□□□ 0.49
CCDC88AQ3V6T2 LILRP1-201ENST00000444199 1370 ntBASIC18.09■□□□□ 0.49
CCDC88AQ3V6T2 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC88AQ3V6T2 GSN-206ENST00000394353 2311 ntTSL 2 BASIC18.09■□□□□ 0.49
CCDC88AQ3V6T2 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC18.09■□□□□ 0.49
CCDC88AQ3V6T2 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC18.09■□□□□ 0.49
CCDC88AQ3V6T2 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC18.09■□□□□ 0.49
CCDC88AQ3V6T2 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC88AQ3V6T2 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
CCDC88AQ3V6T2 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC18.09■□□□□ 0.49
CCDC88AQ3V6T2 AC091564.6-201ENST00000526633 487 ntTSL 3 BASIC18.09■□□□□ 0.49
CCDC88AQ3V6T2 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC18.09■□□□□ 0.49
CCDC88AQ3V6T2 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC18.09■□□□□ 0.49
CCDC88AQ3V6T2 AC073592.2-201ENST00000623062 780 ntBASIC18.09■□□□□ 0.49
CCDC88AQ3V6T2 LINC00431-202ENST00000636375 159 ntBASIC18.09■□□□□ 0.49
CCDC88AQ3V6T2 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
CCDC88AQ3V6T2 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC18.09■□□□□ 0.49
CCDC88AQ3V6T2 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC88AQ3V6T2 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC88AQ3V6T2 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC88AQ3V6T2 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC18.08■□□□□ 0.49
CCDC88AQ3V6T2 AL137783.1-201ENST00000623494 1896 ntBASIC18.08■□□□□ 0.49
CCDC88AQ3V6T2 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC88AQ3V6T2 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC88AQ3V6T2 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC88AQ3V6T2 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC88AQ3V6T2 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC18.08■□□□□ 0.49
CCDC88AQ3V6T2 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
CCDC88AQ3V6T2 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC88AQ3V6T2 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC18.08■□□□□ 0.49
CCDC88AQ3V6T2 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC88AQ3V6T2 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC18.08■□□□□ 0.49
CCDC88AQ3V6T2 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC18.08■□□□□ 0.49
CCDC88AQ3V6T2 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC18.08■□□□□ 0.49
CCDC88AQ3V6T2 KRT17P4-201ENST00000429445 819 ntBASIC18.08■□□□□ 0.49
CCDC88AQ3V6T2 AC012441.2-201ENST00000444843 739 ntBASIC18.08■□□□□ 0.49
CCDC88AQ3V6T2 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC88AQ3V6T2 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC18.08■□□□□ 0.49
CCDC88AQ3V6T2 SNHG17-208ENST00000456953 546 ntTSL 3 BASIC18.08■□□□□ 0.49
CCDC88AQ3V6T2 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC18.08■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 88.6 ms