Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
RPL39P62891 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC10.77□□□□□ -0.69
RPL39P62891 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC10.77□□□□□ -0.69
RPL39P62891 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC10.77□□□□□ -0.69
RPL39P62891 CD63-204ENST00000546939 779 ntTSL 3 BASIC10.77□□□□□ -0.69
RPL39P62891 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC10.77□□□□□ -0.69
RPL39P62891 AP000842.3-202ENST00000569238 1080 ntBASIC10.77□□□□□ -0.69
RPL39P62891 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC10.77□□□□□ -0.69
RPL39P62891 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC10.77□□□□□ -0.69
RPL39P62891 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC10.77□□□□□ -0.69
RPL39P62891 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC10.77□□□□□ -0.69
RPL39P62891 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.69
RPL39P62891 RPS6KC1-206ENST00000543354 4082 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
RPL39P62891 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.69
RPL39P62891 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
RPL39P62891 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
RPL39P62891 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC10.77□□□□□ -0.69
RPL39P62891 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
RPL39P62891 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
RPL39P62891 GDPD5-201ENST00000336898 3523 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
RPL39P62891 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
RPL39P62891 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
RPL39P62891 SDC2-201ENST00000302190 3759 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
RPL39P62891 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC10.77□□□□□ -0.69
RPL39P62891 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.69
RPL39P62891 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC10.77□□□□□ -0.69
RPL39P62891 TET3-201ENST00000305799 5174 ntTSL 5 BASIC10.77□□□□□ -0.69
RPL39P62891 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.69
RPL39P62891 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC10.77□□□□□ -0.69
RPL39P62891 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC10.77□□□□□ -0.69
RPL39P62891 TOLLIP-202ENST00000317204 3617 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
RPL39P62891 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC10.77□□□□□ -0.69
RPL39P62891 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC10.77□□□□□ -0.69
RPL39P62891 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
RPL39P62891 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC10.77□□□□□ -0.69
RPL39P62891 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC10.77□□□□□ -0.69
RPL39P62891 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC10.77□□□□□ -0.69
RPL39P62891 SERTAD2-201ENST00000313349 5549 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
RPL39P62891 GMCL1-201ENST00000282570 4191 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
RPL39P62891 IFITM10-201ENST00000340134 3706 ntAPPRIS P1 TSL 3 BASIC10.76□□□□□ -0.69
RPL39P62891 LINC00863-201ENST00000439559 3287 ntTSL 5 BASIC10.76□□□□□ -0.69
RPL39P62891 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC10.76□□□□□ -0.69
RPL39P62891 FAM156A-221ENST00000622447 3757 ntAPPRIS P2 TSL 1 (best) BASIC10.76□□□□□ -0.69
RPL39P62891 AC023090.2-201ENST00000625182 2110 ntBASIC10.76□□□□□ -0.69
RPL39P62891 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC10.76□□□□□ -0.69
RPL39P62891 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
RPL39P62891 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC10.76□□□□□ -0.69
RPL39P62891 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC10.76□□□□□ -0.69
RPL39P62891 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
RPL39P62891 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC10.76□□□□□ -0.69
RPL39P62891 PRMT3-202ENST00000331079 2653 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
RPL39P62891 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC10.76□□□□□ -0.69
RPL39P62891 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
RPL39P62891 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
RPL39P62891 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC10.76□□□□□ -0.69
RPL39P62891 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC10.76□□□□□ -0.69
RPL39P62891 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC10.76□□□□□ -0.69
RPL39P62891 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC10.76□□□□□ -0.69
RPL39P62891 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC10.76□□□□□ -0.69
RPL39P62891 GPER1-203ENST00000397092 2971 ntAPPRIS P1 TSL 2 BASIC10.76□□□□□ -0.69
RPL39P62891 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC10.76□□□□□ -0.69
RPL39P62891 SELENON-201ENST00000354177 4227 ntAPPRIS ALT2 TSL 5 BASIC10.76□□□□□ -0.69
RPL39P62891 ATG14-201ENST00000247178 4742 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
RPL39P62891 PELP1-202ENST00000436683 3524 ntTSL 2 BASIC10.76□□□□□ -0.69
RPL39P62891 ARHGAP10-201ENST00000336498 3299 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
RPL39P62891 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
RPL39P62891 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC10.76□□□□□ -0.69
RPL39P62891 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
RPL39P62891 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC10.76□□□□□ -0.69
RPL39P62891 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
RPL39P62891 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
RPL39P62891 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC10.76□□□□□ -0.69
RPL39P62891 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC10.76□□□□□ -0.69
RPL39P62891 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
RPL39P62891 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
RPL39P62891 ISY1-203ENST00000393295 3842 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
RPL39P62891 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC10.76□□□□□ -0.69
RPL39P62891 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC10.76□□□□□ -0.69
RPL39P62891 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC10.76□□□□□ -0.69
RPL39P62891 INO80E-210ENST00000567705 880 ntTSL 3 BASIC10.76□□□□□ -0.69
RPL39P62891 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC10.76□□□□□ -0.69
RPL39P62891 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC10.76□□□□□ -0.69
RPL39P62891 AL691432.3-201ENST00000621860 400 ntBASIC10.76□□□□□ -0.69
RPL39P62891 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC10.76□□□□□ -0.69
RPL39P62891 LINC01750-202ENST00000438293 3068 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
RPL39P62891 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
RPL39P62891 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC10.76□□□□□ -0.69
RPL39P62891 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
RPL39P62891 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC10.76□□□□□ -0.69
RPL39P62891 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC10.76□□□□□ -0.69
RPL39P62891 CILP2-201ENST00000291495 4199 ntAPPRIS P2 TSL 1 (best) BASIC10.76□□□□□ -0.69
RPL39P62891 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC10.76□□□□□ -0.69
RPL39P62891 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC10.76□□□□□ -0.69
RPL39P62891 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC10.76□□□□□ -0.69
RPL39P62891 ANGPTL2-202ENST00000373425 3707 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
RPL39P62891 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
RPL39P62891 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
RPL39P62891 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC10.76□□□□□ -0.69
RPL39P62891 RAPH1-213ENST00000630330 4134 ntAPPRIS ALT2 TSL 5 BASIC10.76□□□□□ -0.69
RPL39P62891 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms