Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
LIM2P55344 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC14.38□□□□□ -0.11
LIM2P55344 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LIM2P55344 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
LIM2P55344 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
LIM2P55344 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LIM2P55344 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC14.38□□□□□ -0.11
LIM2P55344 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
LIM2P55344 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
LIM2P55344 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LIM2P55344 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LIM2P55344 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
LIM2P55344 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC14.38□□□□□ -0.11
LIM2P55344 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LIM2P55344 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
LIM2P55344 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
LIM2P55344 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
LIM2P55344 B9D1-203ENST00000395615 805 ntTSL 3 BASIC14.38□□□□□ -0.11
LIM2P55344 LSM5-207ENST00000410044 687 ntTSL 3 BASIC14.38□□□□□ -0.11
LIM2P55344 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC14.38□□□□□ -0.11
LIM2P55344 GSAP-205ENST00000430584 600 ntTSL 5 BASIC14.38□□□□□ -0.11
LIM2P55344 PNKD-204ENST00000436005 978 ntTSL 5 BASIC14.38□□□□□ -0.11
LIM2P55344 TTTY23B-201ENST00000442790 549 ntBASIC14.38□□□□□ -0.11
LIM2P55344 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC14.38□□□□□ -0.11
LIM2P55344 FUZ-207ENST00000526575 482 ntTSL 4 BASIC14.38□□□□□ -0.11
LIM2P55344 AC068587.3-201ENST00000526613 355 ntBASIC14.38□□□□□ -0.11
LIM2P55344 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
LIM2P55344 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC14.38□□□□□ -0.11
LIM2P55344 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC14.38□□□□□ -0.11
LIM2P55344 AC015936.2-201ENST00000593177 259 ntBASIC14.38□□□□□ -0.11
LIM2P55344 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC14.38□□□□□ -0.11
LIM2P55344 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC14.38□□□□□ -0.11
LIM2P55344 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
LIM2P55344 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
LIM2P55344 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
LIM2P55344 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LIM2P55344 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
LIM2P55344 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
LIM2P55344 USP28-214ENST00000545540 3431 ntTSL 2 BASIC14.38□□□□□ -0.11
LIM2P55344 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
LIM2P55344 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LIM2P55344 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC14.38□□□□□ -0.11
LIM2P55344 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LIM2P55344 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
LIM2P55344 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC14.38□□□□□ -0.11
LIM2P55344 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
LIM2P55344 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC14.37□□□□□ -0.11
LIM2P55344 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC14.37□□□□□ -0.11
LIM2P55344 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC14.37□□□□□ -0.11
LIM2P55344 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LIM2P55344 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC14.37□□□□□ -0.11
LIM2P55344 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
LIM2P55344 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC14.37□□□□□ -0.11
LIM2P55344 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LIM2P55344 LRRC59-203ENST00000576448 1531 ntBASIC14.37□□□□□ -0.11
LIM2P55344 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LIM2P55344 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LIM2P55344 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC14.37□□□□□ -0.11
LIM2P55344 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
LIM2P55344 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LIM2P55344 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC14.37□□□□□ -0.11
LIM2P55344 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC14.37□□□□□ -0.11
LIM2P55344 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
LIM2P55344 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC14.37□□□□□ -0.11
LIM2P55344 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC14.37□□□□□ -0.11
LIM2P55344 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC14.37□□□□□ -0.11
LIM2P55344 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC14.37□□□□□ -0.11
LIM2P55344 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC14.37□□□□□ -0.11
LIM2P55344 KRT17P7-201ENST00000451704 1104 ntBASIC14.37□□□□□ -0.11
LIM2P55344 AC022616.1-201ENST00000518688 554 ntBASIC14.37□□□□□ -0.11
LIM2P55344 CR383656.12-201ENST00000549567 513 ntBASIC14.37□□□□□ -0.11
LIM2P55344 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LIM2P55344 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC14.37□□□□□ -0.11
LIM2P55344 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
LIM2P55344 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LIM2P55344 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LIM2P55344 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LIM2P55344 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LIM2P55344 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LIM2P55344 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LIM2P55344 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LIM2P55344 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC14.37□□□□□ -0.11
LIM2P55344 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LIM2P55344 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LIM2P55344 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC14.37□□□□□ -0.11
LIM2P55344 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC14.37□□□□□ -0.11
LIM2P55344 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC14.37□□□□□ -0.11
LIM2P55344 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
LIM2P55344 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC14.37□□□□□ -0.11
LIM2P55344 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC14.37□□□□□ -0.11
LIM2P55344 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
LIM2P55344 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
LIM2P55344 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
LIM2P55344 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LIM2P55344 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LIM2P55344 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC14.36□□□□□ -0.11
LIM2P55344 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC14.36□□□□□ -0.11
LIM2P55344 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LIM2P55344 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC14.36□□□□□ -0.11
LIM2P55344 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 56.1 ms