Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC20.55■□□□□ 0.88
MSH6P52701 ACTN1-AS1-202ENST00000553961 599 ntTSL 4 BASIC20.55■□□□□ 0.88
MSH6P52701 NAMA-206ENST00000605377 509 ntTSL 5 BASIC20.55■□□□□ 0.88
MSH6P52701 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC20.55■□□□□ 0.88
MSH6P52701 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
MSH6P52701 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
MSH6P52701 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
MSH6P52701 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC20.55■□□□□ 0.88
MSH6P52701 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
MSH6P52701 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC20.55■□□□□ 0.88
MSH6P52701 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC20.54■□□□□ 0.88
MSH6P52701 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
MSH6P52701 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
MSH6P52701 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
MSH6P52701 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
MSH6P52701 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC20.54■□□□□ 0.88
MSH6P52701 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC20.54■□□□□ 0.88
MSH6P52701 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
MSH6P52701 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
MSH6P52701 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
MSH6P52701 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC20.54■□□□□ 0.88
MSH6P52701 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC20.54■□□□□ 0.88
MSH6P52701 AC026191.1-204ENST00000517846 608 ntTSL 3 BASIC20.54■□□□□ 0.88
MSH6P52701 AL365275.1-201ENST00000518570 471 ntTSL 2 BASIC20.54■□□□□ 0.88
MSH6P52701 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC20.54■□□□□ 0.88
MSH6P52701 AC012073.1-201ENST00000606114 1108 ntBASIC20.54■□□□□ 0.88
MSH6P52701 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
MSH6P52701 FMR1-215ENST00000616382 1648 ntTSL 5 BASIC20.54■□□□□ 0.88
MSH6P52701 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC20.54■□□□□ 0.88
MSH6P52701 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
MSH6P52701 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
MSH6P52701 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
MSH6P52701 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
MSH6P52701 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
MSH6P52701 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
MSH6P52701 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC20.54■□□□□ 0.88
MSH6P52701 CCDC51-206ENST00000447018 1461 ntTSL 2 BASIC20.54■□□□□ 0.88
MSH6P52701 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
MSH6P52701 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC20.53■□□□□ 0.88
MSH6P52701 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
MSH6P52701 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC20.53■□□□□ 0.88
MSH6P52701 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
MSH6P52701 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC20.53■□□□□ 0.88
MSH6P52701 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
MSH6P52701 DOC2GP-204ENST00000639052 2548 ntBASIC20.53■□□□□ 0.88
MSH6P52701 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
MSH6P52701 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
MSH6P52701 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
MSH6P52701 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
MSH6P52701 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
MSH6P52701 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
MSH6P52701 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC20.53■□□□□ 0.88
MSH6P52701 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
MSH6P52701 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
MSH6P52701 LCE2C-201ENST00000368783 614 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
MSH6P52701 AC019118.2-201ENST00000425776 718 ntTSL 5 BASIC20.53■□□□□ 0.88
MSH6P52701 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
MSH6P52701 HMGB1P24-201ENST00000611897 328 ntBASIC20.53■□□□□ 0.88
MSH6P52701 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
MSH6P52701 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC20.53■□□□□ 0.88
MSH6P52701 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
MSH6P52701 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC20.53■□□□□ 0.88
MSH6P52701 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC20.53■□□□□ 0.88
MSH6P52701 AC003102.2-201ENST00000589195 1469 ntBASIC20.53■□□□□ 0.88
MSH6P52701 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
MSH6P52701 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
MSH6P52701 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC20.52■□□□□ 0.88
MSH6P52701 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
MSH6P52701 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
MSH6P52701 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
MSH6P52701 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC20.52■□□□□ 0.88
MSH6P52701 TLE1P1-201ENST00000422965 589 ntBASIC20.52■□□□□ 0.88
MSH6P52701 FAM92A-202ENST00000423990 914 ntTSL 5 BASIC20.52■□□□□ 0.88
MSH6P52701 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC20.52■□□□□ 0.88
MSH6P52701 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC20.52■□□□□ 0.88
MSH6P52701 AC020636.2-201ENST00000569170 1189 ntAPPRIS P5 TSL 1 (best) BASIC20.52■□□□□ 0.88
MSH6P52701 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC20.52■□□□□ 0.88
MSH6P52701 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC20.52■□□□□ 0.88
MSH6P52701 THY1-209ENST00000580275 578 ntTSL 3 BASIC20.52■□□□□ 0.88
MSH6P52701 TREX1-206ENST00000629913 945 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
MSH6P52701 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC20.52■□□□□ 0.88
MSH6P52701 LINC02447-202ENST00000501888 2146 ntBASIC20.52■□□□□ 0.88
MSH6P52701 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.87
MSH6P52701 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
MSH6P52701 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC20.52■□□□□ 0.87
MSH6P52701 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
MSH6P52701 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
MSH6P52701 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC20.51■□□□□ 0.87
MSH6P52701 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
MSH6P52701 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
MSH6P52701 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC20.51■□□□□ 0.87
MSH6P52701 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
MSH6P52701 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
MSH6P52701 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
MSH6P52701 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC20.51■□□□□ 0.87
MSH6P52701 CHRNA1-203ENST00000409219 1466 ntTSL 3 BASIC20.51■□□□□ 0.87
MSH6P52701 GTF3C6-201ENST00000329970 952 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
MSH6P52701 PLAC9P1-201ENST00000397540 389 ntTSL 2 BASIC20.51■□□□□ 0.87
MSH6P52701 RN7SKP109-201ENST00000410592 316 ntBASIC20.51■□□□□ 0.87
MSH6P52701 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms