Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
NEK3P51956 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
NEK3P51956 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
NEK3P51956 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
NEK3P51956 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
NEK3P51956 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC15.66■□□□□ 0.1
NEK3P51956 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
NEK3P51956 APOA1-205ENST00000375329 927 ntTSL 2 BASIC15.66■□□□□ 0.1
NEK3P51956 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
NEK3P51956 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
NEK3P51956 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC15.66■□□□□ 0.1
NEK3P51956 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
NEK3P51956 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
NEK3P51956 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC15.66■□□□□ 0.1
NEK3P51956 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC15.66■□□□□ 0.1
NEK3P51956 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC15.66■□□□□ 0.1
NEK3P51956 APOC4-201ENST00000591600 348 ntTSL 3 BASIC15.66■□□□□ 0.1
NEK3P51956 AC008735.3-201ENST00000596646 500 ntBASIC15.66■□□□□ 0.1
NEK3P51956 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
NEK3P51956 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
NEK3P51956 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC15.66■□□□□ 0.1
NEK3P51956 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC15.66■□□□□ 0.1
NEK3P51956 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
NEK3P51956 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC15.66■□□□□ 0.1
NEK3P51956 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
NEK3P51956 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
NEK3P51956 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
NEK3P51956 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
NEK3P51956 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC15.66■□□□□ 0.1
NEK3P51956 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
NEK3P51956 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
NEK3P51956 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
NEK3P51956 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC15.66■□□□□ 0.1
NEK3P51956 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
NEK3P51956 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC15.66■□□□□ 0.1
NEK3P51956 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC15.66■□□□□ 0.1
NEK3P51956 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
NEK3P51956 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
NEK3P51956 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
NEK3P51956 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC15.65■□□□□ 0.1
NEK3P51956 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
NEK3P51956 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
NEK3P51956 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
NEK3P51956 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC15.65■□□□□ 0.1
NEK3P51956 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
NEK3P51956 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
NEK3P51956 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
NEK3P51956 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
NEK3P51956 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC15.65■□□□□ 0.1
NEK3P51956 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
NEK3P51956 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC15.65■□□□□ 0.1
NEK3P51956 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
NEK3P51956 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
NEK3P51956 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
NEK3P51956 PGF-202ENST00000405431 666 ntTSL 5 BASIC15.65■□□□□ 0.1
NEK3P51956 ARSEP1-201ENST00000420443 635 ntBASIC15.65■□□□□ 0.1
NEK3P51956 ATP5G2P4-201ENST00000442175 420 ntBASIC15.65■□□□□ 0.1
NEK3P51956 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC15.65■□□□□ 0.1
NEK3P51956 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
NEK3P51956 IGHV3-71-201ENST00000523324 359 ntBASIC15.65■□□□□ 0.1
NEK3P51956 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC15.65■□□□□ 0.1
NEK3P51956 KRT17P8-201ENST00000540749 863 ntBASIC15.65■□□□□ 0.1
NEK3P51956 HILS1-202ENST00000545329 423 ntBASIC15.65■□□□□ 0.1
NEK3P51956 NOP2-220ENST00000545915 630 ntTSL 2 BASIC15.65■□□□□ 0.1
NEK3P51956 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC15.65■□□□□ 0.1
NEK3P51956 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC15.65■□□□□ 0.1
NEK3P51956 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
NEK3P51956 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
NEK3P51956 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
NEK3P51956 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
NEK3P51956 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC15.65■□□□□ 0.1
NEK3P51956 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
NEK3P51956 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
NEK3P51956 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
NEK3P51956 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
NEK3P51956 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
NEK3P51956 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
NEK3P51956 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
NEK3P51956 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC15.65■□□□□ 0.1
NEK3P51956 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
NEK3P51956 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
NEK3P51956 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.1
NEK3P51956 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.1
NEK3P51956 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
NEK3P51956 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
NEK3P51956 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC15.64■□□□□ 0.09
NEK3P51956 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
NEK3P51956 WASH3P-207ENST00000560956 1394 ntBASIC15.64■□□□□ 0.09
NEK3P51956 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
NEK3P51956 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC15.64■□□□□ 0.09
NEK3P51956 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
NEK3P51956 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
NEK3P51956 ACE3P-201ENST00000423435 1973 ntBASIC15.64■□□□□ 0.09
NEK3P51956 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
NEK3P51956 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
NEK3P51956 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
NEK3P51956 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC15.64■□□□□ 0.09
NEK3P51956 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
NEK3P51956 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
NEK3P51956 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 60.8 ms