Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
SOX2P48431 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
SOX2P48431 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
SOX2P48431 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC13.41□□□□□ -0.26
SOX2P48431 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC13.41□□□□□ -0.26
SOX2P48431 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
SOX2P48431 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC13.41□□□□□ -0.26
SOX2P48431 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC13.41□□□□□ -0.26
SOX2P48431 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
SOX2P48431 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC13.41□□□□□ -0.26
SOX2P48431 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
SOX2P48431 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
SOX2P48431 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
SOX2P48431 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC13.41□□□□□ -0.26
SOX2P48431 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
SOX2P48431 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
SOX2P48431 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
SOX2P48431 SYS1-203ENST00000414310 795 ntTSL 3 BASIC13.41□□□□□ -0.26
SOX2P48431 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC13.41□□□□□ -0.26
SOX2P48431 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC13.41□□□□□ -0.26
SOX2P48431 PUS1-205ENST00000535067 838 ntTSL 3 BASIC13.41□□□□□ -0.26
SOX2P48431 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC13.41□□□□□ -0.26
SOX2P48431 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC13.41□□□□□ -0.26
SOX2P48431 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC13.41□□□□□ -0.26
SOX2P48431 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
SOX2P48431 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
SOX2P48431 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
SOX2P48431 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC13.41□□□□□ -0.26
SOX2P48431 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
SOX2P48431 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
SOX2P48431 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
SOX2P48431 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC13.41□□□□□ -0.26
SOX2P48431 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC13.41□□□□□ -0.26
SOX2P48431 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
SOX2P48431 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
SOX2P48431 AC138969.3-201ENST00000546612 1459 ntBASIC13.41□□□□□ -0.26
SOX2P48431 AC138932.2-201ENST00000548268 1459 ntBASIC13.41□□□□□ -0.26
SOX2P48431 AC126755.4-201ENST00000549796 1459 ntBASIC13.41□□□□□ -0.26
SOX2P48431 AC136759.1-202ENST00000530858 2194 ntBASIC13.41□□□□□ -0.26
SOX2P48431 CRYBG2-201ENST00000308182 5245 ntAPPRIS P5 TSL 5 BASIC13.41□□□□□ -0.26
SOX2P48431 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
SOX2P48431 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
SOX2P48431 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
SOX2P48431 AC007787.1-201ENST00000588095 1583 ntBASIC13.41□□□□□ -0.26
SOX2P48431 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC13.4□□□□□ -0.26
SOX2P48431 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SOX2P48431 MCM9-202ENST00000316316 5101 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
SOX2P48431 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SOX2P48431 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SOX2P48431 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SOX2P48431 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SOX2P48431 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SOX2P48431 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SOX2P48431 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC13.4□□□□□ -0.26
SOX2P48431 GPRASP1-203ENST00000444152 5809 ntAPPRIS P1 TSL 3 BASIC13.4□□□□□ -0.26
SOX2P48431 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SOX2P48431 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
SOX2P48431 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
SOX2P48431 SERTAD2-201ENST00000313349 5549 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SOX2P48431 PMP22-202ENST00000395936 816 ntTSL 3 BASIC13.4□□□□□ -0.26
SOX2P48431 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
SOX2P48431 AL133267.1-201ENST00000398220 340 ntBASIC13.4□□□□□ -0.26
SOX2P48431 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
SOX2P48431 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC13.4□□□□□ -0.26
SOX2P48431 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC13.4□□□□□ -0.26
SOX2P48431 PRR29-209ENST00000582540 967 ntTSL 2 BASIC13.4□□□□□ -0.26
SOX2P48431 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC13.4□□□□□ -0.26
SOX2P48431 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC13.4□□□□□ -0.26
SOX2P48431 AC007967.4-201ENST00000614700 386 ntBASIC13.4□□□□□ -0.26
SOX2P48431 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC13.4□□□□□ -0.26
SOX2P48431 AF228730.6-201ENST00000641497 218 ntBASIC13.4□□□□□ -0.26
SOX2P48431 AC084121.3-201ENST00000641716 218 ntBASIC13.4□□□□□ -0.26
SOX2P48431 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SOX2P48431 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
SOX2P48431 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SOX2P48431 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
SOX2P48431 ELL2P1-201ENST00000413990 1906 ntBASIC13.4□□□□□ -0.26
SOX2P48431 AL035456.1-201ENST00000456064 1369 ntBASIC13.4□□□□□ -0.26
SOX2P48431 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC13.4□□□□□ -0.26
SOX2P48431 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC13.4□□□□□ -0.26
SOX2P48431 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SOX2P48431 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SOX2P48431 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
SOX2P48431 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
SOX2P48431 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SOX2P48431 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC13.4□□□□□ -0.26
SOX2P48431 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC13.4□□□□□ -0.26
SOX2P48431 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
SOX2P48431 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SOX2P48431 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
SOX2P48431 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
SOX2P48431 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SOX2P48431 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC13.39□□□□□ -0.27
SOX2P48431 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC13.39□□□□□ -0.27
SOX2P48431 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC13.39□□□□□ -0.27
SOX2P48431 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
SOX2P48431 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
SOX2P48431 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC13.39□□□□□ -0.27
SOX2P48431 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
SOX2P48431 TIGD6-201ENST00000296736 4006 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms